Characterizing brain anatomical connections using diffusion weighted MRI and graph theory. - Yasser Iturria-Medina; Erick Jorge Canales-Rodríguez; Lester Melie-García; Pedro A. Valdés-Hernández; Eduardo Martínez-Montes; Yasser Alemán-Gómez; Jose Miguel Sanchez Bornot (NeuroImage, 2007)

Studying the human brain anatomical network via diffusion-weighted MRI and Graph Theory. - Yasser Iturria-Medina; Roberto C. Sotero; Erick Jorge Canales-Rodríguez; Yasser Alemán-Gómez; Lester Melie-García (NeuroImage, 2008)

A Bayesian framework to identify principal intravoxel diffusion profiles based on diffusion-weighted MR imaging. - Lester Melie-García; Erick Jorge Canales-Rodríguez; Yasser Alemán-Gómez; Ching-Po Lin; Yasser Iturria-Medina; Pedro A. Valdés-Hernández (NeuroImage, 2008)

Deconvolution in diffusion spectrum imaging. - Erick Jorge Canales-Rodríguez; Yasser Iturria-Medina; Yasser Alemán-Gómez; Lester Melie-García (NeuroImage, 2010)

Surface area and cortical thickness descriptors reveal different attributes of the structural human brain networks. - Gretel Sanabria-Diaz; Lester Melie-García; Yasser Iturria-Medina; Yasser Alemán-Gómez; Gertrudis Hernández-González; Lourdes Valdés-Urrutia; Lídice Galán; Pedro A. Valdés-Sosa (NeuroImage, 2010)

Statistical analysis of brain tissue images in the wavelet domain: Wavelet-based morphometry. - Erick Jorge Canales-Rodríguez; Joaquim Radua; Edith Pomarol-Clotet; Salvador Sarró; Yasser Alemán-Gómez; Yasser Iturria-Medina; Raymond Salvador (NeuroImage, 2013)

Porting Matlab Applications to High-Performance C++ Codes: CPU/GPU-Accelerated Spherical Deconvolution of Diffusion MRI Data. - Javier García Blas; Manuel F. Dolz; José Daniel García; Jesús Carretero 001; Alessandro Daducci; Yasser Alemán-Gómez; Erick Jorge Canales-Rodríguez (ICA3PP, 2016)

fMRat: an extension of SPM for a fully automatic analysis of rodent brain functional magnetic resonance series. - Cristina Chavarrías; Verónica García-Vázquez; Yasser Alemán-Gómez; Paula Montesinos; Javier Pascau; Manuel Desco (Medical Biol. Eng. Comput., 2016)

Individual differences in the dominance of interhemispheric connections predict cognitive ability beyond sex and brain size. - Kenia Martínez; Joost Janssen; José Angel Pineda-Pardo; Susanna Carmona; Francisco J. Román; Yasser Alemán-Gómez; David Garcia-Garcia; Sergio Escorial; M. Ángeles Quiroga; Emiliano Santarnecchi; Francisco J. Navas-Sanchez; Manuel Desco; et al. (NeuroImage, 2017)

Sparse wars: A survey and comparative study of spherical deconvolution algorithms for diffusion MRI. - Erick Jorge Canales-Rodríguez; Jon Haitz Legarreta; Marco Pizzolato; Gaëtan Rensonnet; Gabriel Girard; Jonathan Rafael-Patino; Muhamed Barakovic; David Romascano; Yasser Alemán-Gómez; Joaquim Radua; Edith Pomarol-Clotet; Raymond Salvador; et al. (NeuroImage, 2019)

An Anatomically-Informed 3D CNN for Brain Aneurysm Classification with Weak Labels. - Tommaso Di Noto; Guillaume Marie; Sébastien Tourbier; Yasser Alemán-Gómez; Guillaume Saliou; Meritxell Bach Cuadra; Patric Hagmann; Jonas Richiardi (MLCN/RNO-AI@MICCAI, 2020)

Quantitative Evaluation of Enhanced Multi-plane Clinical Fetal Diffusion MRI with a Crossing-Fiber Phantom. - Hamza Kebiri; Hélène Lajous; Yasser Alemán-Gómez; Gabriel Girard; Erick Jorge Canales-Rodríguez; Sébastien Tourbier; Marco Pizzolato; Jean-Baptiste Ledoux; Eleonora Fornari; András Jakab; Meritxell Bach Cuadra (CDMRI@MICCAI, 2021)

Simulated Half-Fourier Acquisitions Single-shot Turbo Spin Echo (HASTE) of the Fetal Brain: Application to Super-Resolution Reconstruction. - Hélène Lajous; Tom Hilbert; Christopher W. Roy; Sébastien Tourbier; Priscille de Dumast; Yasser Alemán-Gómez; Thomas Yu; Hamza Kebiri; Jean-Baptiste Ledoux; Patric Hagmann; Reto Meuli; Vincent Dunet; et al. (UNSURE/PIPPI@MICCAI, 2021)

Weak labels and anatomical knowledge: making deep learning practical for intracranial aneurysm detection in TOF-MRA. - Tommaso Di Noto; Guillaume Marie; Sébastien Tourbier; Yasser Alemán-Gómez; Oscar Esteban; Guillaume Saliou; Meritxell Bach Cuadra; Patric Hagmann; Jonas Richiardi (CoRR, 2021)

FaBiAN: A Fetal Brain magnetic resonance Acquisition Numerical phantom. - Hélène Lajous; Christopher W. Roy; Tom Hilbert; Priscille de Dumast; Sébastien Tourbier; Yasser Alemán-Gómez; Jérôme Yerly; Thomas Yu; Hamza Kebiri; Kelly Payette; Jean-Baptiste Ledoux; Reto Meuli; et al. (CoRR, 2021)

Slice Estimation in Diffusion MRI of Neonatal and Fetal Brains in Image and Spherical Harmonics Domains Using Autoencoders. - Hamza Kebiri; Gabriel Girard; Yasser Alemán-Gómez; Thomas Yu; András Jakab; Erick Jorge Canales-Rodríguez; Meritxell Bach Cuadra (CDMRI@MICCAI, 2022)

Connectome Mapper 3: A Flexible and Open-Source Pipeline Software for Multiscale Multimodal Human Connectome Mapping. - Sébastien Tourbier; Joan Rué Queralt; Katharina Glomb; Yasser Alemán-Gómez; Emeline Mullier; Alessandra Griffa; Mikkel Schöttner; Jonathan Wirsich; Mustafa Anil Tuncel; Jakub Jancovic; Meritxell Bach Cuadra; Patric Hagmann (J. Open Source Softw., 2022)

ABLE: Automated Brain Lines Extraction Based on Laplacian Surface Collapse. - Alberto Fernández-Pena; Daniel Martín de Blas; Francisco J. Navas-Sanchez; Luis Marcos-Vidal; Pedro M. Gordaliza; Javier Santonja; Joost Janssen; Susanna Carmona; Manuel Desco; Yasser Alemán-Gómez (Neuroinformatics, 2023)

Towards Automated Brain Aneurysm Detection in TOF-MRA: Open Data, Weak Labels, and Anatomical Knowledge. - Tommaso Di Noto; Guillaume Marie; Sébastien Tourbier; Yasser Alemán-Gómez; Oscar Esteban; Guillaume Saliou; Meritxell Bach Cuadra; Patric Hagmann; Jonas Richiardi (Neuroinformatics, 2023)

Assessing workflow impact and clinical utility of AI-assisted brain aneurysm detection: a multi-reader study. - Tommaso Di Noto; Sofyan Jankowski; Francesco Puccinelli; Guillaume Marie; Sébastien Tourbier; Yasser Alemán-Gómez; Oscar Esteban; Ricardo Corredor-Jerez; Guillaume Saliou; Patric Hagmann; Meritxell Bach Cuadra; Jonas Richiardi (CoRR, 2025)

Structural Connectome Harmonization Using Deep Learning: The Strength of Graph Neural Networks. - Jagruti Patel; Thomas William Arthur Bolton; Mikkel Schöttner; Anjali Tarun; Sébastien Tourbier; Yasser Alemán-Gómez; Jonas Richiardi; Patric Hagmann (CoRR, 2025)