ProtDCal: A program to compute general-purpose-numerical descriptors for sequences and 3D-structures of proteins. - Yasser B. Ruiz-Blanco; Waldo Paz; James Green 001; Yovani Marrero-Ponce (BMC Bioinform., 2015)

Exploring general-purpose protein features for distinguishing enzymes and non-enzymes within the twilight zone. - Yasser B. Ruiz-Blanco; Guillermín Agüero-Chapín; Enrique García-Hernández; Orlando Álvarez; Agostinho Antunes; James Green 001 (BMC Bioinform., 2017)

PPI-Detect: A support vector machine model for sequence-based prediction of protein-protein interactions. - Sandra Romero-Molina; Yasser B. Ruiz-Blanco; Mirja Harms; Jan Münch; Elsa Sánchez-García (J. Comput. Chem., 2019)