COSMOS: Python library for massively parallel workflows. - Erik Gafni; Lovelace J. Luquette; Alex Lancaster; Jared B. Hawkins; Jae-Yoon Jung; Yassine Souilmi; Dennis P. Wall; Peter J. Tonellato (Bioinform., 2014)

COSMOS: cloud enabled NGS analysis. - Yassine Souilmi; Jae-Yoon Jung; Alex Lancaster; Erik Gafni; Saaid Amzazi; Hassan Ghazal; Dennis P. Wall; Peter J. Tonellato (BMC Bioinform., 2015)

MC-GenomeKey: a multicloud system for the detection and annotation of genomic variants. - Hatem Elshazly; Yassine Souilmi; Peter J. Tonellato; Dennis P. Wall; Mohamed Abouelhoda (BMC Bioinform., 2017)

Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics. - Shakuntala Baichoo; Yassine Souilmi; Sumir Panji; Gerrit Botha; Ayton Meintjes; Scott Hazelhurst; Hocine Bendou; Eugene de Beste; Phelelani T. Mpangase; Oussema Souiai; Mustafa Alghali; Long Yi; et al. (BMC Bioinform., 2018)

genozip: a fast and efficient compression tool for VCF files. - Divon Lan; Raymond Tobler; Yassine Souilmi; Bastien Llamas (Bioinform., 2020)

Systematic benchmark of ancient DNA read mapping. - Adrien Oliva; Raymond Tobler; Alan Cooper; Bastien Llamas; Yassine Souilmi (Briefings Bioinform., 2021)

Genozip: a universal extensible genomic data compressor. - Divon Lan; Raymond Tobler; Yassine Souilmi; Bastien Llamas (Bioinform., 2021)

Filtering out the noise: metagenomic classifiers optimize ancient DNA mapping. - Shyamsundar Ravishankar; Vilma Perez; Roberta Davidson; Xavier Roca-Rada; Divon Lan; Yassine Souilmi; Bastien Llamas (Briefings Bioinform., 2024)