The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. - Hajime Ohyanagi; Tsuyoshi Tanaka; Hiroaki Sakai; Yasumasa Shigemoto; Kaori Yamaguchi; Takuya Habara; Yasuyuki Fujii; Baltazar A. Antonio; Yoshiaki Nagamura; Tadashi Imanishi; Kazuho Ikeo; Takeshi Itoh; et al. (Nucleic Acids Res., 2006)

Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes. - Masaki Hirahata; Takashi Abe; Naoto Tanaka; Yoshikazu Kuwana; Yasumasa Shigemoto; Satoru Miyazaki; Yoshiyuki Suzuki; Hideaki Sugawara (Nucleic Acids Res., 2007)

Web API for biology with a workflow navigation system. - Yeondae Kwon; Yasumasa Shigemoto; Yoshikazu Kuwana; Hideaki Sugawara (Nucleic Acids Res., 2009)

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. - Toshiaki Katayama; Kazuharu Arakawa; Mitsuteru Nakao; Keiichiro Ono; Kiyoko F. Aoki-Kinoshita; Yasunori Yamamoto; Atsuko Yamaguchi; Shuichi Kawashima; Hong-Woo Chun; Jan Aerts; Bruno Aranda; Lord H. Barboza; et al. (J. Biomed. Semant., 2010)

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications. - Toshiaki Katayama; Mark D. Wilkinson; Rutger A. Vos; Takeshi Kawashima; Shuichi Kawashima; Mitsuteru Nakao; Yasunori Yamamoto; Hong-Woo Chun; Atsuko Yamaguchi; Shin Kawano; Jan Aerts; Kiyoko F. Aoki-Kinoshita; et al. (J. Biomed. Semant., 2011)

Implementation of linked data in the life sciences at BioHackathon 2011. - Kiyoko F. Aoki-Kinoshita; Akira R. Kinjo; Mizuki Morita; Yoshinobu Igarashi; Yi-an Chen; Yasumasa Shigemoto; Takatomo Fujisawa; Yukie Akune; Takeo Katoda; Anna Kokubu; Takaaki Mori; Mitsuteru Nakao; et al. (J. Biomed. Semant., 2015)