Comprehensive study on iterative algorithms of multiple sequence alignment. - Makoto Hirosawa; Yasushi Totoki; Masaki Hoshida; Masato Ishikawa (Comput. Appl. Biosci., 1995)

Functional Prediction of B. subtilis Genes from Their Regulatory Sequences. - Tetsushi Yada; Yasushi Totoki; Takahiro Ishii; Kenta Nakai (ISMB, 1997)

Automatic extraction of motifs represented in the hidden Markov model from a number of DNA sequences. - Tetsushi Yada; Yasushi Totoki; Masato Ishikawa; Kiyoshi Asai; Kenta Nakai (Bioinform., 1998)

Modeling and predicting transcriptional units of <$O_SSF>Escherichia coli<$C_SSF>genes using hidden Markov models. - Tetsushi Yada; Mitsuteru Nakao; Yasushi Totoki; Kenta Nakai (Bioinform., 1999)

DIGIT: A Novel Gene Finding Program by Combining Gene-Finders. - Tetsushi Yada; Yasushi Totoki; Y. Takaeda; Yasubumi Sakaki; Toshihisa Takagi (Pacific Symposium on Biocomputing, 2003)