HaDeS: architectural synthesis for heterogeneous dark silicon chip multi-processors. - Yatish Turakhia; Bharathwaj Raghunathan; Siddharth Garg; Diana Marculescu (DAC, 2013)

Cherry-picking: exploiting process variations in dark-silicon homogeneous chip multi-processors. - Bharathwaj Raghunathan; Yatish Turakhia; Siddharth Garg; Diana Marculescu (DATE, 2013)

Framework for Application Mapping over Packet-Switched Network of FPGAs: Case Studies. - Vinay B. Y. Kumar; Pinalkumar Engineer; Mandar Datar 001; Yatish Turakhia; Saurabh Agarwal; Sanket Diwale; Sachin B. Patkar (CoRR, 2015)

Thread Progress Equalization: Dynamically Adaptive Power and Performance Optimization of Multi-threaded Applications. - Yatish Turakhia; Guangshuo Liu; Siddharth Garg; Diana Marculescu (CoRR, 2016)

HoLiSwap: Reducing Wire Energy in L1 Caches. - Yatish Turakhia; Subhasis Das; Tor M. Aamodt; William J. Dally (CoRR, 2017)

Thread Progress Equalization: Dynamically Adaptive Power-Constrained Performance Optimization of Multi-Threaded Applications. - Yatish Turakhia; Guangshuo Liu; Siddharth Garg; Diana Marculescu (IEEE Trans. Computers, 2017)

Darwin: A Genomics Co-processor Provides up to 15, 000X Acceleration on Long Read Assembly. - Yatish Turakhia; Gill Bejerano; William J. Dally (ASPLOS, 2018)

Darwin-WGA: A Co-processor Provides Increased Sensitivity in Whole Genome Alignments with High Speedup. - Yatish Turakhia; Sneha D. Goenka; Gill Bejerano; William J. Dally (HPCA, 2019)

Parallel Approach to Sliding Window Sums. - Roman Snytsar; Yatish Turakhia (ICA3PP (2), 2019)

Darwin: A Genomics Coprocessor. - Yatish Turakhia; Gill Bejerano; William J. Dally (IEEE Micro, 2019)

SegAlign: a scalable GPU-based whole genome aligner. - Sneha D. Goenka; Yatish Turakhia; Benedict Paten; Mark Horowitz (SC, 2020)

Domain-specific hardware accelerators. - William J. Dally; Yatish Turakhia; Song Han 003 (Commun. ACM, 2020)

ShUShER: private browser-based placement of sensitive genome samples on phylogenetic trees. - Alexander Kramer; Yatish Turakhia; Russell Corbett-Detig (J. Open Source Softw., 2021)

HiCOMB 2022 Invited Speaker: Pandemic-scale Phylogenetics. - Yatish Turakhia (IPDPS Workshops, 2022)

matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2. - Cheng Ye; Bryan Thornlow; Angie S. Hinrichs; Alexander Kramer; Cade Mirchandani; Devika Torvi; Robert Lanfear; Russell Corbett-Detig; Yatish Turakhia (Bioinform., 2022)

BTE: a Python module for pandemic-scale mutation-annotated phylogenetic trees. - Jakob McBroome; Yatish Turakhia; Russell Corbett-Detig (J. Open Source Softw., 2022)

phastSim: Efficient simulation of sequence evolution for pandemic-scale datasets. - Nicola De Maio; William R. Boulton; Lukas Weilguny; Conor R. Walker; Yatish Turakhia; Russell Corbett-Detig; Nick Goldman (PLoS Comput. Biol., 2022)

Tracking and curating putative SARS-CoV-2 recombinants with RIVET. - Kyle Smith; Cheng Ye; Yatish Turakhia (Bioinform., 2023)

DecentTree: scalable Neighbour-Joining for the genomic era. - Weiwen Wang; James Barbetti; Thomas Wong; Bryan Thornlow; Russell Corbett-Detig; Yatish Turakhia; Robert Lanfear; Bui Quang Minh (Bioinform., 2023)

TALCO: Tiling Genome Sequence Alignment Using Convergence of Traceback Pointers. - Sumit Walia; Cheng Ye; Arkid Bera; Dhruvi Lodhavia; Yatish Turakhia (HPCA, 2024)

The Genomic Computing Revolution: Defining the Next Decades of Accelerating Genomics. - Harisankar Sadasivan; Artur Klauser; Jürgen Hench; Yatish Turakhia; Gagandeep Singh 002; Alberto Zeni; Sarah J. Beecroft; Satish Narayanasamy; Jeff Nivala; Bob Robey; Onur Mutlu; Kristof Denolf; et al. (HPEC, 2024)

DP-HLS: A High-Level Synthesis Framework for Accelerating Dynamic Programming Algorithms in Bioinformatics. - Yingqi Cao; Anshu Gupta; Jason Liang; Yatish Turakhia (CoRR, 2024)

Toward a Generalized Accelerator for Genome Sequence Analysis. - Yatish Turakhia (Commun. ACM, 2025)