Wavelet-based color texture retrieval using the independent component color space. - Ye Mei; Dimitrios Androutsos (ICIP, 2008)

Color texture retrieval using wavelet decomposition on the Hue/Saturation plane. - Ye Mei; Dimitrios Androutsos (ICME, 2008)

Affine invariant shape descriptors: The ICA-Fourier descriptor and the PCA-Fourier descriptor. - Ye Mei; Dimitrios Androutsos (ICPR, 2008)

Efficient bond function basis set for pi-pi interaction energies. - Yun Ding; Ye Mei; John Z. H. Zhang; Fu-Ming Tao (J. Comput. Chem., 2008)

PCA-whitening CSS shape descriptor for affine invariant image retrieval. - Ye Mei; Dimitri Androutsos (CCECE, 2009)

Robust affine invariant shape image retrieval using the ICA Zernike Moment Shape Descriptor. - Ye Mei; Dimitrios Androutsos (ICIP, 2009)

Robust Affine Invariant Region-Based Shape Descriptors: The ICA Zernike Moment Shape Descriptor and the Whitening Zernike Moment Shape Descriptor. - Ye Mei; Dimitrios Androutsos (IEEE Signal Process. Lett., 2009)

Electrostatic polarization is critical for the strong binding in streptavidin-biotin system. - Ye Mei; Yong L. Li; Juan Zeng; John Z. H. Zhang (J. Comput. Chem., 2012)

A numerically stable restrained electrostatic potential charge fitting method. - Juan Zeng; LiLi Duan; John Z. H. Zhang; Ye Mei (J. Comput. Chem., 2013)

The F130L mutation in streptavidin reduces its binding affinity to biotin through electronic polarization effect. - Juan Zeng; Xiangyu Jia; John Z. H. Zhang; Ye Mei (J. Comput. Chem., 2013)

Predicting hydration free energies with a hybrid QM/MM approach: an evaluation of implicit and explicit solvation models in SAMPL4. - Gerhard König; Frank C. Pickard IV; Ye Mei; Bernard R. Brooks (J. Comput. Aided Mol. Des., 2014)

Accessing the applicability of polarized protein-specific charge in linear interaction energy analysis. - Xiangyu Jia; Juan Zeng; John Z. H. Zhang; Ye Mei (J. Comput. Chem., 2014)

Evaluation of the Coupled Two-Dimensional Main Chain Torsional Potential in Modeling Intrinsically Disordered Proteins. - Ya Gao 004; Chaomin Zhang; John Z. H. Zhang; Ye Mei (J. Chem. Inf. Model., 2017)

Efficient Strategy for the Calculation of Solvation Free Energies in Water and Chloroform at the Quantum Mechanical/Molecular Mechanical Level. - Meiting Wang; Pengfei Li; Xiangyu Jia; Wei Liu; Yihan Shao; Wenxin Hu; Jun Zheng; Bernard R. Brooks; Ye Mei (J. Chem. Inf. Model., 2017)

Convex Aggregation Operators and Their Applications to Multi-Hesitant Fuzzy Multi-Criteria Decision-Making. - Ye Mei; Juanjuan Peng; Junjie Yang (Inf., 2018)

Free energy change estimation: The Divide and Conquer MBAR method. - Xiangyu Jia; Hu Ge; Ye Mei (J. Comput. Chem., 2021)

Training machine learning potentials for reactive systems: A Colab tutorial on basic models. - Xiao-Liang Pan; Ryan Snyder; Jia-Ning Wang; Chance Lander; Carly Wickizer; Richard Van; Andrew Chesney; Yuanfei Xue; Yuezhi Mao; Ye Mei; Jingzhi Pu; Yihan Shao (J. Comput. Chem., 2024)

FEP-SPell-ABFE: An Open-Source Automated Alchemical Absolute Binding Free-Energy Calculation Workflow for Drug Discovery. - Pengfei Li; Tingting Pu; Ye Mei (J. Chem. Inf. Model., 2025)