PALS db: Putative Alternative Splicing database. - Yen-Hua Huang; Yu-Tin Chen; Jiunn-Jei Lai; S.-T. Yang; Ueng-Cheng Yang (Nucleic Acids Res., 2002)

PINT: Pathways INtegration Tool. - Yi-Ting Wang; Yen-Hua Huang; Y.-C. Chen; Chia-Lang Hsu; Ueng-Cheng Yang (Nucleic Acids Res., 2010)

Applying Software Defined Methodologies to Software Computing. - William Cheng-Chung Chu; Chih-Hung Chang; Tse-Chuan Hsu; Yen-Hua Huang (TSA, 2016)

TSSNet - A Deep Neural Network Model for Predicting Prokaryotic Transcription Start Sites. - Chung-En Ni; Duy-Phuong Doan; Yen-Jung Chiu; Yen-Hua Huang (BIBE, 2022)

TSSUNet-MB - ab initio identification of σ70 promoter transcription start sites in Escherichia coli using deep multitask learning. - Chung-En Ni; Duy-Phuong Doan; Yen-Jung Chiu; Yen-Hua Huang (Comput. Biol. Chem., 2023)