CPred: a web server for predicting viable circular permutations in proteins. - Wei-Cheng Lo; Li-Fen Wang; Yen-Yi Liu; Tian Dai; Jenn-Kang Hwang; Ping-Chiang Lyu (Nucleic Acids Res., 2012)

MIB2: metal ion-binding site prediction and modeling server. - Chih-Hao Lu; Chih-Chieh Chen; Chin-Sheng Yu; Yen-Yi Liu; Jia-Jun Liu; Sung-Tai Wei; Yu-Feng Lin (Bioinform., 2022)

5NosoAE: a web server for nosocomial bacterial antibiogram investigation and epidemiology survey. - Chih-Chieh Chen; Yen-Yi Liu; Ya-Chu Yang; Chu-Yi Hsu (Nucleic Acids Res., 2022)