AutoInt: Automatic Feature Interaction Learning via Self-Attentive Neural Networks. - Weiping Song; Chence Shi; Zhiping Xiao 001; Zhijian Duan 001; Yewen Xu; Ming Zhang 004; Jian Tang 005 (CIKM, 2019)

MCIBox: a toolkit for single-molecule multi-way chromatin interaction visualization and micro-domains identification. - Simon Zhongyuan Tian; Guoliang Li 002; Duo Ning; Kai Jing; Yewen Xu; Yang Yang; Melissa Jane Fullwood; Pengfei Yin; Guangyu Huang; Dariusz Plewczynski; Jixian Zhai; Ziwei Dai; et al. (Briefings Bioinform., 2022)

ScSmOP: a universal computational pipeline for single-cell single-molecule multiomics data analysis. - Kai Jing; Yewen Xu; Yang Yang; Pengfei Yin; Duo Ning; Guangyu Huang; Yuqing Deng; Gengzhan Chen; Guoliang Li 002; Simon Zhongyuan Tian; Meizhen Zheng (Briefings Bioinform., 2023)

Rectified Flow for Efficient Automatic Implant Generation. - Yan Zhou; Dewang Ye; Yewen Xu; Yuexia Zhou; Xiangyu Liu; Zhaojian Lin; Haotian Lei (CGI (3), 2024)

Recurrent Diffusion for 3D Point Cloud Generation From a Single Image. - Yan Zhou; Dewang Ye; Huaidong Zhang; Xuemiao Xu; Huajie Sun; Yewen Xu; Xiangyu Liu; Yuexia Zhou (IEEE Trans. Image Process., 2025)

Tgcpn: two-level grid context propagation network for 3D small object detection. - Yan Zhou; Lei Pu; Xuemiao Xu; Chang'an Yi; Xinwei He; Yuexia Zhou; Yewen Xu (Pattern Anal. Appl., 2025)