VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology. - Zhenjun Hu; Jui-Hung Hung; Yan Wang; Yi-Chien Chang; Chia-Ling Huang; Matt Huyck; Charles DeLisi (Nucleic Acids Res., 2009)

COMBREX: a project to accelerate the functional annotation of prokaryotic genomes. - Richard J. Roberts; Yi-Chien Chang; Zhenjun Hu; John Rachlin; Brian P. Anton; Revonda M. Pokrzywa; Han-Pil Choi; Lina L. Faller; Jyotsna Guleria; Genevieve Housman; Niels Klitgord; Varun Mazumdar; et al. (Nucleic Acids Res., 2011)

VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies. - Zhenjun Hu; Yi-Chien Chang; Yan Wang; Chia-Ling Huang; Yang Liu; Feng Tian; Brian Granger; Charles DeLisi (Nucleic Acids Res., 2013)

COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gaps. - Yi-Chien Chang; Zhenjun Hu; John Rachlin; Brian P. Anton; Simon Kasif; Richard J. Roberts; Martin Steffen (Nucleic Acids Res., 2016)

Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0. - Brian Granger; Yi-Chien Chang; Yan Wang; Charles DeLisi; Daniel Segrè; Zhenjun Hu (PLoS Comput. Biol., 2016)

Systematic approaches to mine, predict and visualize biological functions - Yi-Chien Chang (2016)

A Target-Specific Evidence Function for Indication Expansion Queries in the Open Targets Platform. - Erin Teeple; Yi-Chien Chang; Deepak K. Rajpal (BHI, 2021)