Predicting and analyzing DNA-binding domains using a systematic approach to identifying a set of informative physicochemical and biochemical properties. - Hui-Ling Huang; I-Che Lin; Yi-Fan Liou; Chia-Ta Tsai; Kai-Ti Hsu; Wen-Lin Huang; Shinn-Jang Ho; Shinn-Ying Ho (BMC Bioinform., 2011)

SCMHBP: prediction and analysis of heme binding proteins using propensity scores of dipeptides. - Yi-Fan Liou; Phasit Charoenkwan; Yerukala Sathipati Srinivasulu; Tamara Vasylenko; Shih-Chung Lai; Hua-Chin Lee; Yi-Hsiung Chen; Hui-Ling Huang; Shinn-Ying Ho (BMC Bioinform., 2014)

SCMPSP: Prediction and characterization of photosynthetic proteins based on a scoring card method. - Tamara Vasylenko; Yi-Fan Liou; Hong-An Chen; Phasit Charoenkwan; Hui-Ling Huang; Shinn-Ying Ho (BMC Bioinform., 2015)

A hydrophobic spine stabilizes a surface-exposed α-helix according to analysis of the solvent-accessible surface area. - Yi-Fan Liou; Hui-Ling Huang; Shinn-Ying Ho (BMC Bioinform., 2016)

SCMBYK: prediction and characterization of bacterial tyrosine-kinases based on propensity scores of dipeptides. - Tamara Vasylenko; Yi-Fan Liou; Po-Chin Chiou; Hsiao-Wei Chu; Yung-Sung Lai; Yu-Ling Chou; Hui-Ling Huang; Shinn-Ying Ho (BMC Bioinform., 2016)

ThermalProGAN: A sequence-based thermally stable protein generator trained using unpaired data. - Hui-Ling Huang; Chong-Heng Weng; Torbjörn E. M. Nordling; Yi-Fan Liou (J. Bioinform. Comput. Biol., 2023)