Tissue tracking: applications for brain MRI classification. - John Melonakos; Yi Gao 002; Allen R. Tannenbaum (Image Processing, 2007)

Simultaneous Multi-object Segmentation Using Local Robust Statistics and Contour Interaction. - Yi Gao 002; Allen R. Tannenbaum; Ron Kikinis (MCV, 2010)

Segmentation of the endocardial wall of the left atrium using local region-based active contours and statistical shape learning. - Yi Gao 002; Behnood Gholami; Robert S. MacLeod; Joshua Blauer; Wassim M. Haddad 001; Allen R. Tannenbaum (Image Processing, 2010)

Fast Hamilton-Jacobi equation solver and neural fiber bundle extraction. - Yi Gao 002; John Melonakos; Allen R. Tannenbaum (Image Processing, 2010)

Image processing and registration in a point set representation. - Yi Gao 002; Allen R. Tannenbaum (Image Processing, 2010)

Shape based MRI prostate image segmentation using local information driven directional distance Bayesian method. - Yi Gao 002; Allen R. Tannenbaum (Image Processing, 2010)

'Active contour without edges', on parametric manifolds. - Yi Gao 002; Allen R. Tannenbaum (Image Processing, 2010)

A Coupled Global Registration and Segmentation Framework With Application to Magnetic Resonance Prostate Imagery. - Yi Gao 002; Romeil Sandhu; Gabor Fichtinger; Allen R. Tannenbaum (IEEE Trans. Medical Imaging, 2010)

Combining atlas and active contour for automatic 3D medical image segmentation. - Yi Gao 002; Allen R. Tannenbaum (ISBI, 2011)

Estimation of myocardial volume at risk from CT angiography. - Liangjia Zhu; Yi Gao 002; Vandana Mohan; Arthur E. Stillman; Tracy L. Faber; Allen R. Tannenbaum (Computer-Aided Diagnosis, 2011)

Statistical Shape Analysis for Population Studies via Level-Set Based Shape Morphing. - Tammy Riklin Raviv; Yi Gao 002; James J. Levitt; Sylvain Bouix (ECCV Workshops (1), 2012)

Automatic segmentation of the left atrium from MRI images using salient feature and contour evolution. - Liangjia Zhu; Yi Gao 002; Anthony J. Yezzi; Robert S. MacLeod; Joshua Cates; Allen R. Tannenbaum (EMBC, 2012)

Synthesis of Realistic Subcortical Anatomy with Known Surface Deformations. - Yi Gao 002; Sylvain Bouix (MeshMed, 2012)

Volumetric Mapping of Genus Zero Objects via Mass Preservation - Romeil Sandhu; Ayelet Dominitz; Yi Gao 002; Allen R. Tannenbaum (CoRR, 2012)

Multiscale 3D shape representation and segmentation with applications to hippocampal/caudate extraction from brain MRI. - Yi Gao 002; Benjamin Corn; Dan Schifter; Allen R. Tannenbaum (Medical Image Anal., 2012)

A 3D interactive multi-object segmentation tool using local robust statistics driven active contours. - Yi Gao 002; Ron Kikinis; Sylvain Bouix; Martha Elizabeth Shenton; Allen R. Tannenbaum (Medical Image Anal., 2012)

Filtering in the Diffeomorphism Group and the Registration of Point Sets. - Yi Gao 002; Yogesh Rathi; Sylvain Bouix; Allen R. Tannenbaum (IEEE Trans. Image Process., 2012)

Automatic Delineation of the Myocardial Wall From CT Images Via Shape Segmentation and Variational Region Growing. - Liangjia Zhu; Yi Gao 002; Vikram V. Appia; Anthony J. Yezzi; Chesnal D. Arepalli; Tracy L. Faber; Arthur E. Stillman; Allen R. Tannenbaum (IEEE Trans. Biomed. Eng., 2013)

Sparse Texture Active Contour. - Yi Gao 002; Sylvain Bouix; Martha Elizabeth Shenton; Allen R. Tannenbaum (IEEE Trans. Image Process., 2013)

Automatic Segmentation of the Left Atrium From MR Images via Variational Region Growing With a Moments-Based Shape Prior. - Liangjia Zhu; Yi Gao 002; Anthony J. Yezzi; Allen R. Tannenbaum (IEEE Trans. Image Process., 2013)

Signed poisson map for shape analysis. - Yi Gao 002; Sylvain Bouix (ISBI, 2014)

Depth-Based Shape-Analysis. - Yi Hong 006; Yi Gao 002; Marc Niethammer; Sylvain Bouix (MICCAI (3), 2014)

Reconstruction and feature selection for desorption electrospray ionization mass spectroscopy imagery. - Yi Gao 002; Liangjia Zhu; Isaiah Norton; Nathalie Y. R. Agar; Allen R. Tannenbaum (Image-Guided Procedures, 2014)

A framework for joint image-and-shape analysis. - Yi Gao 002; Allen R. Tannenbaum; Sylvain Bouix (Image Processing, 2014)

Interpolation of longitudinal shape and image data via optimal mass transport. - Yi Gao 002; Liangjia Zhu; Sylvain Bouix; Allen R. Tannenbaum (Image Processing, 2014)

Statistical Shape Analysis of Neuroanatomical Structures via Level-Set-based Shape Morphing. - Tammy Riklin Raviv; Yi Gao 002; James J. Levitt; Sylvain Bouix (SIAM J. Imaging Sci., 2014)

A Complete System for Automatic Extraction of Left Ventricular Myocardium From CT Images Using Shape Segmentation and Contour Evolution. - Liangjia Zhu; Yi Gao 002; Vikram V. Appia; Anthony J. Yezzi; Chesnal D. Arepalli; Tracy L. Faber; Arthur E. Stillman; Allen R. Tannenbaum (IEEE Trans. Image Process., 2014)

Efficient Multiple Instance Convolutional Neural Networks for Gigapixel Resolution Image Classification. - Le Hou; Dimitris Samaras; Tahsin M. Kurç; Yi Gao 002; James E. Davis; Joel H. Saltz (CoRR, 2015)

Shape analysis based on depth-ordering. - Yi Hong 006; Yi Gao 002; Marc Niethammer; Sylvain Bouix (Medical Image Anal., 2015)

A Kalman Filtering Perspective for Multiatlas Segmentation. - Yi Gao 002; Liangjia Zhu; Joshua Cates; Rob S. MacLeod; Sylvain Bouix; Allen R. Tannenbaum (SIAM J. Imaging Sci., 2015)

Safe "cloudification" of large images through picker APIs. - Erich Bremer; Tahsin M. Kurç; Yi Gao 002; Joel H. Saltz; Jonas S. Almeida (AMIA, 2016)

Patch-Based Convolutional Neural Network for Whole Slide Tissue Image Classification. - Le Hou; Dimitris Samaras; Tahsin M. Kurç; Yi Gao 002; James E. Davis; Joel H. Saltz (CVPR, 2016)

Multi-scale learning based segmentation of glands in digital colonrectal pathology images. - Yi Gao 002; William Liu; Shipra Arjun; Liangjia Zhu; Vadim Ratner; Tahsin M. Kurç; Joel H. Saltz; Allen R. Tannenbaum (Digital Pathology, 2016)

Hierarchical nucleus segmentation in digital pathology images. - Yi Gao 002; Vadim Ratner; Liangjia Zhu; Tammy Diprima; Tahsin M. Kurç; Allen R. Tannenbaum; Joel H. Saltz (Digital Pathology, 2016)

Neural Networks with Smooth Adaptive Activation Functions for Regression. - Le Hou; Dimitris Samaras; Tahsin M. Kurç; Yi Gao 002; Joel H. Saltz (CoRR, 2016)

Statistical shape analysis using 3D Poisson equation - A quantitatively validated approach. - Yi Gao 002; Sylvain Bouix (Medical Image Anal., 2016)

ConvNets with Smooth Adaptive Activation Functions for Regression. - Le Hou; Dimitris Samaras; Tahsin M. Kurç; Yi Gao 002; Joel H. Saltz (AISTATS, 2017)

Evaluation of nucleus segmentation in digital pathology images through large scale image synthesis. - Naiyun Zhou; Xiaxia Yu; Tianhao Zhao; Si Wen; Fusheng Wang 001; Wei Zhu 008; Tahsin M. Kurç; Allen R. Tannenbaum; Joel H. Saltz; Yi Gao 002 (Digital Pathology, 2017)

Algorithm sensitivity analysis and parameter tuning for tissue image segmentation pipelines. - George Teodoro; Tahsin M. Kurç; Luis F. R. Taveira; Alba C. M. A. Melo; Yi Gao 002 (Bioinform., 2017)

Sparse Autoencoder for Unsupervised Nucleus Detection and Representation in Histopathology Images. - Le Hou; Vu Nguyen 004; Dimitris Samaras; Tahsin M. Kurç; Yi Gao 002; Tianhao Zhao; Joel H. Saltz (CoRR, 2017)

Large scale digital prostate pathology image analysis combining feature extraction and deep neural network. - Naiyun Zhou; Andriy Fedorov; Fiona Fennessy; Ron Kikinis; Yi Gao 002 (CoRR, 2017)

Cerebrospinal and interstitial fluid transport via the glymphatic pathway modeled by optimal mass transport. - Vadim Ratner; Yi Gao 002; Hedok Lee; Rena Elkin; Maiken Nedergaard; Helene Benveniste; Allen R. Tannenbaum (NeuroImage, 2017)

Is hippocampus getting bumpier with age: a quantitative analysis of fine-scale dentational feature under the hippocampus on 552 healthy subjects. - Shuxiu Cai; Xiaxia Yu; Qiaochu Zhang; Chuan Huang 002; Yi Gao 002 (Image Processing, 2019)

Sparse autoencoder for unsupervised nucleus detection and representation in histopathology images. - Le Hou; Vu Nguyen 004; Ariel B. Kanevsky; Dimitris Samaras; Tahsin M. Kurç; Tianhao Zhao; Rajarsi R. Gupta; Yi Gao 002; Wenjin Chen; David J. Foran; Joel H. Saltz (Pattern Recognit., 2019)

MCMC Guided CNN Training and Segmentation for Pancreas Extraction. - Jinchan He; Xiaxia Yu; Chudong Cai; Yi Gao 002 (CoRR, 2020)

Cross-Dataset Multiple Organ Segmentation From CT Imagery Using FBP-Derived Domain Adaptation. - Jun Huang; Xue Li; Jing Wang; Xiaxia Yu; Liangjia Zhu; Ying Zhan; Yi Gao 002; Chuan Huang 002 (IEEE Access, 2021)

MCMC Guided CNN Training and Segmentation for Pancreas Extraction. - Mu Tian; Jinchan He; Xiaxia Yu; Chudong Cai; Yi Gao 002 (IEEE Access, 2021)

An Open Source Platform for Computational Histopathology. - Xiaxia Yu; Bingshuai Zhao; Haofan Huang; Mu Tian; Sai Zhang; Hongping Song; Zengshan Li; Kun Huang; Yi Gao 002 (IEEE Access, 2021)

Multi-scale Multi-task Distillation for Incremental 3D Medical Image Segmentation. - Mu Tian; Qinzhu Yang; Yi Gao 002 (ECCV Workshops (3), 2022)

An efficient deep equilibrium model for medical image segmentation. - Sai Zhang; Liangjia Zhu; Yi Gao 002 (Comput. Biol. Medicine, 2022)

Open-source algorithm and software for computed tomography-based virtual pancreatoscopy and other applications. - Haofan Huang; Xiaxia Yu; Mu Tian; Weizhen He; Shawn Xiang Li; Zhengrong Liang; Yi Gao 002 (Vis. Comput. Ind. Biomed. Art, 2022)

Two fully automated data-driven 3D whole-breast segmentation strategies in MRI for MR-based breast density using image registration and U-Net with a focus on reproducibility. - Jia Ying; Renee Cattell; Tianyun Zhao; Lan Lei; Zhao Jiang; Shahid M. Hussain; Yi Gao 002; H.-H. Sherry Chow; Alison T. Stopeck; Patricia A. Thompson; Chuan Huang 002 (Vis. Comput. Ind. Biomed. Art, 2022)

A VR-based volumetric medical image segmentation and visualization system with natural human interaction. - Yi Gao 002; Cheng Chang; Xiaxia Yu; Pengjin Pang; Nian Xiong; Chuan Huang 002 (Virtual Real., 2022)

Synthesizing with Diffusion model for improving medical image segmentation performance. - Zengan Huang; Qinzhu Yang; Mu Tian; Yi Gao 002 (BIBM, 2023)

A dynamic interactive learning framework for automated 3D medical image segmentation. - Mu Tian; Xiaohui Chen; Yi Gao 002 (CoRR, 2023)

AttenScribble: Attentive Similarity Learning for Scribble-Supervised Medical Image Segmentation. - Mu Tian; Qinzhu Yang; Yi Gao 002 (CoRR, 2023)

Expectation-maximization algorithm leads to domain adaptation for a perineural invasion and nerve extraction task in whole slide digital pathology images. - Xue Li; Jun Huang; Cuiting Wang; Xiaxia Yu; Tianhao Zhao; Chuan Huang 002; Yi Gao 002 (Medical Biol. Eng. Comput., 2023)

A Comprehensive Landscape of Imaging Feature-Associated RNA Expression Profiles in Human Breast Tissue. - Tian Mou; Jianwen Liang; Trung-Nghia Vu; Mu Tian; Yi Gao 002 (Sensors, 2023)

Combing 3D body surface and CT volumetric data for ankylosing spondylitis surgery outcome simulation. - Weizhen He; Haoran Zhu; Jialing Feng; Qinzhu Yang; Yanzhe Wei; Zhengji Huang; Huiren Tao; Yi Gao 002 (ISBI, 2024)

Enhanced Deformation Vector Field Generation With Diffusion Models and Mamba-Based Network for Registration Performance Enhancement. - Zengan Huang; Shan Gao; Xiaxia Yu; Liangjia Zhu; Yi Gao 002 (Int. J. Imaging Syst. Technol., 2024)

Synthesizing Images With Annotations for Medical Image Segmentation Using Diffusion Probabilistic Model. - Zengan Huang; Qinzhu Yang; Mu Tian; Yi Gao 002 (Int. J. Imaging Syst. Technol., 2025)