Towards an obesity-cancer knowledge base: Biomedical entity identification and relation detection. - Juan Antonio Lossio-Ventura; William R. Hogan; François Modave; Amanda Hicks; Josh Hanna; Yi Guo 005; Zhe He 001; Jiang Bian 001 (BIBM, 2016)

Examining Healthcare Utilization Patterns of Elderly and Middle-Aged Adults in the United States. - Cilia E. Zayas; Zhe He 001; Jiawei Yuan; Mildred Maldonado-Molina; William R. Hogan; François Modave; Yi Guo 005; Jiang Bian 001 (FLAIRS, 2016)

Comparing and Contrasting A Priori and A Posteriori Generalizability Assessment of Clinical Trials on Type 2 Diabetes Mellitus. - Zhe He 001; Arturo Gonzalez-Izquierdo; Spiros C. Denaxas; Andrei Sura; Yi Guo 005; William R. Hogan; Elizabeth Shenkman; Jiang Bian 001 (AMIA, 2017)

Implementing a Hash-based Privacy-Preserving Entity Resolution Tool in the OneFlorida Clinical Data Research Network. - Jiang Bian 001; Andrei Sura; Gloria P. Lipori; Yi Guo 005; François Modave; Zhe He 001; Elizabeth Shenkman; William R. Hogan (AMIA, 2017)

Building an Obesity and Cancer Semantic Web Knowledge Base. - Juan Antonio Lossio-Ventura; William R. Hogan; François Modave; Amanda Hicks; Yi Guo 005; Zhe He 001; Mirela Vasconcelos; Jiang Bian 001 (AMIA, 2017)

A Twitter Study of the Relationship between the Geographic Variations of HPV Vaccination Rates and Online Information in the United States. - Hansi Zhang; Yunpeng Zhao; Christopher Wheldon; Xinsong Du; Terrell Brown; Yi Guo 005; Stephanie Staras; Jingcheng Du; Cui Tao; Jiang Bian 001 (AMIA, 2017)

OC-2-KB: A software pipeline to build an evidence-based obesity and cancer knowledge base. - Juan Antonio Lossio-Ventura; William R. Hogan; François Modave; Yi Guo 005; Zhe He 001; Amanda Hicks; Jiang Bian 001 (BIBM, 2017)

Data integration through ontology-based data access to support integrative data analysis: A case study of cancer survival. - Hansi Zhang; Yi Guo 005; Qian Li 034; Thomas J. George; Elizabeth A. Shenkman; Jiang Bian 001 (BIBM, 2017)

Ontology of Cancer Related Social-Ecological Variables. - Dharani K. Balasubramanian; Jamillah Z. Khan; Jiang Bian 001; Yi Guo 005; William R. Hogan; Amanda Hicks (ICBO, 2017)

Explore Care Pathways of Colorectal Cancer Patients with Social Network Analysis. - Tianyao Huo; Thomas J. George Jr.; Yi Guo 005; Zhe He 001; Mattia Prosperi; François Modave; Jiang Bian 001 (MedInfo, 2017)

Towards a privacy preserving cohort discovery framework for clinical research networks. - Jiawei Yuan; Bradley A. Malin; François Modave; Yi Guo 005; William R. Hogan; Elizabeth Shenkman; Jiang Bian 001 (J. Biomed. Informatics, 2017)

Combine Factual Medical Knowledge and Distributed Word Representation to Improve Clinical Named Entity Recognition. - Yonghui Wu; Xi Yang 015; Jiang Bian 001; Yi Guo 005; Hua Xu 001; William R. Hogan (AMIA, 2018)

Computable Eligibility Criteria through Ontology-driven Data Access: A Case Study of Hepatitis C Virus Trials. - Hansi Zhang; Zhe He 001; Xing He 003; Yi Guo 005; David R. Nelson; François Modave; Yonghui Wu; William R. Hogan; Mattia Prosperi; Jiang Bian 001 (AMIA, 2018)

Prototyping an Interactive Visualization of Dietary Supplement Knowledge Graph. - Xing He 003; Rui Zhang 028; Rubina F. Rizvi; Jake Vasilakes; Xi Yang 015; Yi Guo 005; Zhe He 001; Mattia Prosperi; Jiang Bian 001 (BIBM, 2018)

Assessing Mental Health Signals Among Sexual and Gender Minorities using Twitter Data. - Yunpeng Zhao; Yi Guo 005; Xing He 003; Jinhai Huo; Yonghui Wu; Xi Yang 015; Jiang Bian 001 (ICHI Workshops, 2018)

OC-2-KB: integrating crowdsourcing into an obesity and cancer knowledge base curation system. - Juan Antonio Lossio-Ventura; William R. Hogan; François Modave; Yi Guo 005; Zhe He 001; Xi Yang 015; Hansi Zhang; Jiang Bian 001 (BMC Medical Informatics Decis. Mak., 2018)

An ontology-guided semantic data integration framework to support integrative data analysis of cancer survival. - Hansi Zhang; Yi Guo 005; Qian Li 034; Thomas J. George; Elizabeth Shenkman; François Modave; Jiang Bian 001 (BMC Medical Informatics Decis. Mak., 2018)

Assessing the Validity of a a priori Patient-Trial Generalizability Score using Real-world Data from a Large Clinical Data Research Network: A Colorectal Cancer Clinical Trial Case Study. - Qian Li 034; Zhe He 001; Yi Guo 005; Hansi Zhang; Thomas J. George; William R. Hogan; Neil Charness; Jiang Bian 001 (AMIA, 2019)

STAT: A Web-based Semantic Text Annotation Tool to Assist Building Mental Health Knowledge Base. - Xing He 003; Hansi Zhang; Xi Yang 015; Yi Guo 005; Jiang Bian 001 (ICHI, 2019)

Understanding Perceptions and Attitudes in Breast Cancer Discussions on Twitter. - François Modave; Yunpeng Zhao; Janice L. Krieger; Zhe He 001; Yi Guo 005; Jinhai Huo; Mattia Prosperi; Jiang Bian 001 (MedInfo, 2019)

Exploring Lung Cancer Screening Discussions on Twitter. - Yunpeng Zhao; Jinhai Huo; Mattia Prosperi; Yi Guo 005; Yongqiu Li; Jiang Bian 001 (MedInfo, 2019)

Ontology for Documentation of Variable and Data Source Selection Process to Support Integrative Data Analysis in Cancer Outcomes Research. - Hansi Zhang; Yi Guo 005; Jiang Bian 001 (SEPDA@ISWC, 2019)

Mining Twitter to Assess the Determinants of Health Behavior towards Human Papillomavirus Vaccination in the United States. - Hansi Zhang; Christopher Wheldon; Adam G. Dunn; Cui Tao; Jinhai Huo; Rui Zhang 028; Mattia Prosperi; Yi Guo 005; Jiang Bian 001 (CoRR, 2019)

ALOHA: developing an interactive graph-based visualization for dietary supplement knowledge graph through user-centered design. - Xing He 003; Rui Zhang 028; Rubina F. Rizvi; Jake Vasilakes; Xi Yang 015; Yi Guo 005; Zhe He 001; Mattia Prosperi; Jinhai Huo; Jordan Alpert; Jiang Bian 001 (BMC Medical Informatics Decis. Mak., 2019)

Developing and Validating a Computable Phenotype for the Identification of Transgender and Gender Nonconforming Individuals and Subgroups. - Yi Guo 005; Xing He 003; Tianchen Lyu; Hansi Zhang; Yonghui Wu; Xi Yang 015; Zhaoyi Chen; Merry J. Markham; François Modave; Mengjun Xie; William R. Hogan; Christopher A. Harle; et al. (AMIA, 2020)

Using Real-World Data to Rationalize Clinical Trials Eligibility Criteria: a case study on Alzheimer's Disease and Donepezil. - Qian Li 034; Yi Guo 005; Zhe He 001; Hansi Zhang; Thomas J. George; Jiang Bian 001 (AMIA, 2020)

A Natural Language Processing Tool to Extract Quantitative Smoking Status from Clinical Narratives. - Xi Yang 015; Hanyuan Yang; Tianchen Lyu; Shuang Yang; Yi Guo 005; Jiang Bian 001; Hua Xu 001; Yonghui Wu (ICHI, 2020)

Integrating Crowdsourcing and Active Learning for Classification of Work-Life Events from Tweets. - Yunpeng Zhao; Mattia Prosperi; Tianchen Lyu; Yi Guo 005; Le Zhou; Jiang Bian 001 (IEA/AIE, 2020)

Integrating Crowdsourcing and Active Learning for Classification of Work-Life Events from Tweets. - Yunpeng Zhao; Mattia Prosperi; Tianchen Lyu; Yi Guo 005; Jiang Bian 001 (CoRR, 2020)

Assessing the effect of data integration on predictive ability of cancer survival models. - Yi Guo 005; Jiang Bian 001; François Modave; Qian Li 034; Thomas J. George; Mattia Prosperi; Elizabeth Shenkman (Health Informatics J., 2020)

Assessing mental health signals among sexual and gender minorities using Twitter data. - Yunpeng Zhao; Yi Guo 005; Xing He 003; Yonghui Wu; Xi Yang 015; Mattia Prosperi; Yanghua Jin; Jiang Bian 001 (Health Informatics J., 2020)

Assessing the practice of data quality evaluation in a national clinical data research network through a systematic scoping review in the era of real-world data. - Jiang Bian 001; Tianchen Lyu; Alexander T. Loiacono; Tonatiuh Mendoza Viramontes; Gloria P. Lipori; Yi Guo 005; Yonghui Wu; Mattia Prosperi; Thomas J. George; Christopher A. Harle; Elizabeth A. Shenkman; William R. Hogan (J. Am. Medical Informatics Assoc., 2020)

Mining Twitter to assess the determinants of health behavior toward human papillomavirus vaccination in the United States. - Hansi Zhang; Christopher Wheldon; Adam G. Dunn; Cui Tao; Jinhai Huo; Rui Zhang 028; Mattia Prosperi; Yi Guo 005; Jiang Bian 001 (J. Am. Medical Informatics Assoc., 2020)

An ontology-based documentation of data discovery and integration process in cancer outcomes research. - Hansi Zhang; Yi Guo 005; Mattia Prosperi; Jiang Bian 001 (BMC Medical Informatics Decis. Mak., 2020)

Causal inference and counterfactual prediction in machine learning for actionable healthcare. - Mattia Prosperi; Yi Guo 005; Matthew Sperrin; James S. Koopman; Jae S. Min; Xing He 003; Shannan N. Rich; Mo Wang; Iain E. Buchan; Jiang Bian 001 (Nat. Mach. Intell., 2020)

Validation of Real-World Data-based Endpoint Measures of Cancer Treatment Outcomes. - Qian Li 034; Hansi Zhang; Zhaoyi Chen; Yi Guo 005; Thomas J. George; Yong Chen 016; Fei Wang 001; Jiang Bian 001 (AMIA, 2021)

A Study of Social and Behavioral Determinants of Health in Lung Cancer Patients Using Transformers-based Natural Language Processing Models. - Zehao Yu 001; Xi Yang 015; Chong Dang; Songzi Wu; Prakash Adekkanattu; Jyotishman Pathak; Thomas J. George; William R. Hogan; Yi Guo 005; Jiang Bian 001; Yonghui Wu (AMIA, 2021)

Data and Model Biases in Social Media Analyses: A Case Study of COVID-19 Tweets. - Yunpeng Zhao; Pengfei Yin; Yongqiu Li; Xing He 003; Jingcheng Du; Cui Tao; Yi Guo 005; Mattia Prosperi; Pierangelo Veltri; Xi Yang 015; Yonghui Wu; Jiang Bian 001 (AMIA, 2021)

Transformer-based named entity recognition for parsing clinical trial eligibility criteria. - Shubo Tian; Arslan Erdengasileng; Xi Yang 015; Yi Guo 005; Yonghui Wu; Jinfeng Zhang; Jiang Bian 001; Zhe He 001 (BCB, 2021)

Clinical Relation Extraction Using Transformer-based Models. - Xi Yang 015; Zehao Yu 001; Yi Guo 005; Jiang Bian 001; Yonghui Wu (CoRR, 2021)

The application of artificial intelligence and data integration in COVID-19 studies: a scoping review. - Yi Guo 005; Yahan Zhang; Tianchen Lyu; Mattia Prosperi; Fei Wang 001; Hua Xu 001; Jiang Bian 001 (J. Am. Medical Informatics Assoc., 2021)

Deep propensity network using a sparse autoencoder for estimation of treatment effects. - Shantanu Ghosh; Jiang Bian 001; Yi Guo 005; Mattia Prosperi (J. Am. Medical Informatics Assoc., 2021)

Bagged random causal networks for interventional queries on observational biomedical datasets. - Mattia Prosperi; Yi Guo 005; Jiang Bian 001 (J. Biomed. Informatics, 2021)

Exploring the feasibility of using real-world data from a large clinical data research network to simulate clinical trials of Alzheimer's disease. - Zhaoyi Chen; Hansi Zhang; Yi Guo 005; Thomas J. George; Mattia Prosperi; William R. Hogan; Zhe He 001; Elizabeth A. Shenkman; Fei Wang 001; Jiang Bian 001 (npj Digit. Medicine, 2021)

Impacts of Eligibility Criteria on Trial Participants' Age in Alzheimer's Disease Clinical Trials. - Aokun Chen; Qian Li 034; Xing He 003; Michael Jaffee; William R. Hogan; Fei Wang 001; Yi Guo 005; Jiang Bian 001 (AMIA, 2022)

A Preliminary Study of Extracting Pulmonary Nodules and Nodule Characteristics from Radiology Reports Using Natural Language Processing. - Shuang Yang; Xi Yang 015; Tianchen Lyu; Xing He 003; Dejana Braithwaite; Hiren J. Mehta; Yi Guo 005; Yonghui Wu; Jiang Bian 001 (ICHI, 2022)

SODA: A Natural Language Processing Package to Extract Social Determinants of Health for Cancer Studies. - Zehao Yu 001; Xi Yang 015; Chong Dang; Prakash Adekkanattu; Braja Gopal Patra; Yifan Peng 002; Jyotishman Pathak; Debbie L. Wilson; Ching-Yuan Chang; Wei-Hsuan Lo-Ciganic; Thomas J. George; William R. Hogan; et al. (CoRR, 2022)

A scoping review of semantic integration of health data and information. - Hansi Zhang; Tianchen Lyu; Pengfei Yin; Sarah Bost; Xing He 003; Yi Guo 005; Mattia Prosperi; William R. Hogan; Jiang Bian 001 (Int. J. Medical Informatics, 2022)

Biases in using social media data for public health surveillance: A scoping review. - Yunpeng Zhao; Xing He 003; Zheng Feng; Sarah Bost; Mattia Prosperi; Yonghui Wu; Yi Guo 005; Jiang Bian 001 (Int. J. Medical Informatics, 2022)

Exploring the Effect of Eligibility Criteria on AD Severity and Severe Adverse Event in Eligible Patients. - Aokun Chen; Qian Li 034; Elizabeth Shenkman; Yonghui Wu; Yi Guo 005; Jiang Bian 001 (ICHI, 2023)

Real-World Effectiveness of Lung Cancer Screening Using Deep Learning-Based Counterfactual Prediction. - Zheng Feng; Zhaoyi Chen; Yi Guo 005; Mattia Prosperi; Hiren J. Mehta; Dejana Braithwaite; Yonghui Wu; Jiang Bian 001 (MedInfo, 2023)

Assess the documentation of cognitive tests and biomarkers in electronic health records via natural language processing for Alzheimer's disease and related dementias. - Zhaoyi Chen; Hansi Zhang; Xi Yang 015; Songzi Wu; Xing He 003; Jie Xu 012; Jingchuan Guo; Mattia Prosperi; Fei Wang 001; Hua Xu 001; Yong Chen 016; Hui Hu; et al. (Int. J. Medical Informatics, 2023)

Predicting the Risk of Alzheimer's Disease and Related Dementia in Patients with Mild Cognitive Impairment Using a Semi-Competing Risk Approach. - Zhaoyi Chen; Yuchen Yang; Dazheng Zhang; Jingchuan Guo; Yi Guo 005; Xia Hu 001; Yong Chen 016; Jiang Bian 001 (Informatics, 2023)

A study of generative large language model for medical research and healthcare. - Cheng Peng 009; Xi Yang 015; Aokun Chen; Kaleb E. Smith; Nima M. Pournejatian; Anthony B. Costa; Cheryl Martin 002; Mona G. Flores; Ying Zhang; Tanja Magoc; Gloria P. Lipori; Duane A. Mitchell; et al. (npj Digit. Medicine, 2023)

Contextualized medication information extraction using Transformer-based deep learning architectures. - Aokun Chen; Zehao Yu 001; Xi Yang 015; Yi Guo 005; Jiang Bian 001; Yonghui Wu (J. Biomed. Informatics, 2023)

The role of health system penetration rate in estimating the prevalence of type 1 diabetes in children and adolescents using electronic health records. - Piaopiao Li; Tianchen Lyu; Khalid Alkhuzam; Eliot Spector; William T. Donahoo; Sarah Bost; Yonghui Wu; William R. Hogan; Mattia Prosperi; Desmond A. Schatz; Mark A Atkinson; Michael J. Haller; et al. (J. Am. Medical Informatics Assoc., 2023)

Message from the General Chairs; ICHI 2024. - Zhe He 001; Yi Guo 005; Jiang Bian 001 (ICHI, 2024)

Feasibility of Identifying Factors Related to Alzheimer's Disease and Related Dementia in Real-World Data. - Aokun Chen; Qian Li 034; Yu Huang 018; Yongqiu Li; Yu-Neng Chuang; Xia Hu 001; Serena Guo; Yonghui Wu; Yi Guo 005; Jiang Bian 001 (CoRR, 2024)

Narrative Feature or Structured Feature? A Study of Large Language Models to Identify Cancer Patients at Risk of Heart Failure. - Ziyi Chen; Mengyuan Zhang; Mustafa Mohammed Ahmed; Yi Guo 005; Thomas J. George; Jiang Bian 001; Yonghui Wu (CoRR, 2024)

Exploring the Relation between Contextual Social Determinants of Health and COVID-19 Occurrence and Hospitalization. - Aokun Chen; Yunpeng Zhao; Yi Zheng; Hui Hu; Xia Hu 001; Jennifer N. Fishe; William R. Hogan; Elizabeth A. Shenkman; Yi Guo 005; Jiang Bian 001 (Informatics, 2024)

Identifying social determinants of health from clinical narratives: A study of performance, documentation ratio, and potential bias. - Zehao Yu 001; Cheng Peng 009; Xi Yang 015; Chong Dang; Prakash Adekkanattu; Braja Gopal Patra; Yifan Peng 002; Jyotishman Pathak; Debbie L. Wilson; Ching-Yuan Chang; Wei-Hsuan Lo-Ciganic; Thomas J. George; et al. (J. Biomed. Informatics, 2024)

Extracting Pulmonary Nodules and Nodule Characteristics from Radiology Reports of Lung Cancer Screening Patients Using Transformer Models. - Shuang Yang; Xi Yang 015; Tianchen Lyu; James L. Huang; Aokun Chen; Xing He 003; Dejana Braithwaite; Hiren J. Mehta; Yonghui Wu; Yi Guo 005; Jiang Bian 001 (J. Heal. Informatics Res., 2024)

Machine Learning Prediction of Autism Spectrum Disorder Diagnosis Through Linking Mothers' and Children's Electronic Health Records. - Yongqiu Li; Yu Huang 018; Shuang Yang; Elahe M. Shychuk; Elizabeth A. Shenkman; Jiang Bian 001; Amber M. Angell; Yi Guo 005 (ICHI, 2025)

GatorCLR: Personalized predictions of patient outcomes on electronic health records using self-supervised contrastive graph representation. - Yuxi Liu; Zhenhao Zhang; Jiacong Mi; Shirui Pan; Tianlong Chen 001; Yi Guo 005; Xing He 003; Jiang Bian 001 (J. Biomed. Informatics, 2025)

A Topic Modeling Analysis of Stigma Dimensions, Social, and Related Behavioral Circumstances in Clinical Notes Among Patients with HIV. - Ziyi Chen; Yiyang Liu; Mattia Prosperi; Krishna Vaddiparti; Robert L. Cook 002; Jiang Bian 001; Yi Guo 005; Yonghui Wu (CoRR, 2025)