Boosting Evolutionary Support Vector Machine for Designing Tumor Classifiers from Microarray Data. - Hui-Ling Huang; Yi-Hsiung Chen; Dwight D. Koeberl; Shinn-Ying Ho (CIBCB, 2007)

SCMHBP: prediction and analysis of heme binding proteins using propensity scores of dipeptides. - Yi-Fan Liou; Phasit Charoenkwan; Yerukala Sathipati Srinivasulu; Tamara Vasylenko; Shih-Chung Lai; Hua-Chin Lee; Yi-Hsiung Chen; Hui-Ling Huang; Shinn-Ying Ho (BMC Bioinform., 2014)

GeNOSA: inferring and experimentally supporting quantitative gene regulatory networks in prokaryotes. - Yi-Hsiung Chen; Chi-Dung Yang; Ching-Ping Tseng; Hsien-Da Huang; Shinn-Ying Ho (Bioinform., 2015)