A powerful and flexible approach to the analysis of RNA sequence count data. - Yi-Hui Zhou; Kai Xia; Fred A. Wright (Bioinform., 2011)

seeQTL: a searchable database for human eQTLs. - Kai Xia; Andrey A. Shabalin; Shunping Huang; Vered Madar; Yi-Hui Zhou; Wei Wang 010; Fei Zou; Wei Sun 006; Patrick F. Sullivan; Fred A. Wright (Bioinform., 2012)

Eigenvector-based sparse canonical correlation analysis: Fast computation for estimation of multiple canonical vectors. - Wenjia Wang; Yi-Hui Zhou (J. Multivar. Anal., 2021)

C3NA: correlation and consensus-based cross-taxonomy network analysis for compositional microbial data. - Kuncheng Song; Yi-Hui Zhou (BMC Bioinform., 2022)

AI in healthcare: navigating opportunities and challenges in digital communication. - George Sun; Yi-Hui Zhou (Frontiers Digit. Health, 2023)

Control of false discoveries in grouped hypothesis testing for eQTL data. - Pratyaydipta Rudra; Yi-Hui Zhou; Andrew B. Nobel; Fred A. Wright (BMC Bioinform., 2024)

Identifying novel therapeutic targets in cystic fibrosis through advanced single-cell transcriptomics analysis. - George Sun; Yi-Hui Zhou (Comput. Biol. Medicine, 2025)