One Size Doesn't Fit All - RefEditor: Building Personalized Diploid Reference Genome to Improve Read Mapping and Genotype Calling in Next Generation Sequencing Studies. - Shuai Yuan; H. Richard Johnston; Guosheng Zhang; Yun Li; Yi-Juan Hu; Zhaohui S. Qin (PLoS Comput. Biol., 2015)

Robust inference of population structure from next-generation sequencing data with systematic differences in sequencing. - Peizhou Liao; Glen A. Satten; Yi-Juan Hu (Bioinform., 2018)

Testing hypotheses about the microbiome using the linear decomposition model (LDM). - Yi-Juan Hu; Glen A. Satten (Bioinform., 2020)

A rarefaction-based extension of the LDM for testing presence-absence associations in the microbiome. - Yi-Juan Hu; Andrea Lane; Glen A. Satten (Bioinform., 2021)

A rarefaction-without-resampling extension of PERMANOVA for testing presence-absence associations in the microbiome. - Yi-Juan Hu; Glen A. Satten (Bioinform., 2022)

A new approach to testing mediation of the microbiome at both the community and individual taxon levels. - Ye Yue; Yi-Juan Hu (Bioinform., 2022)

Integrative analysis of relative abundance data and presence-absence data of the microbiome using the LDM. - Zhengyi Zhu; Glen A. Satten; Yi-Juan Hu (Bioinform., 2022)

Testing microbiome associations with survival times at both the community and individual taxon levels. - Yingtian Hu; Yunxiao Li; Glen A. Satten; Yi-Juan Hu (PLoS Comput. Biol., 2022)

Compositional analysis of microbiome data using the linear decomposition model (LDM). - Yi-Juan Hu; Glen A. Satten (Bioinform., 2023)