NAIL, a software toolset for inferring, analyzing and visualizing regulatory networks. - Daniel G. Hurley; Joseph Cursons; Yi Kan Wang; David M. Budden; Cristin G. Print; Edmund J. Crampin (Bioinform., 2015)

Integrated structural variation and point mutation signatures in cancer genomes using correlated topic models. - Tyler Funnell; Allen W. Zhang; Diljot Grewal; Steven McKinney; Ali Bashashati; Yi Kan Wang; Sohrab P. Shah (PLoS Comput. Biol., 2019)

Virchow: A Million-Slide Digital Pathology Foundation Model. - Eugene Vorontsov; Alican Bozkurt; Adam Casson; George Shaikovski; Michal Zelechowski; Siqi Liu; Philippe Mathieu; Alexander van Eck; Donghun Lee; Julian Viret; Eric Robert; Yi Kan Wang; et al. (CoRR, 2023)

PRISM: A Multi-Modal Generative Foundation Model for Slide-Level Histopathology. - George Shaikovski; Adam Casson; Kristen Severson 001; Eric Zimmermann; Yi Kan Wang; Jeremy D. Kunz; Juan Retamero; Gerard Oakley; David S. Klimstra; Christopher Kanan; Matthew G. Hanna; Michal Zelechowski; et al. (CoRR, 2024)

Screen Them All: High-Throughput Pan-Cancer Genetic and Phenotypic Biomarker Screening from H&E Whole Slide Images. - Yi Kan Wang; Ludmila Tydlitatova; Jeremy D. Kunz; Gerard Oakley; Ran A. Godrich; Matthew C. H. Lee; Chad Vanderbilt; Razik Yousfi; Thomas J. Fuchs; David S. Klimstra; Siqi Liu (CoRR, 2024)

PRISM2: Unlocking Multi-Modal General Pathology AI with Clinical Dialogue. - George Shaikovski; Eugene Vorontsov; Adam Casson; Julian Viret; Eric Zimmermann; Neil A. Tenenholtz; Yi Kan Wang; Jan Bernhard; Ran A. Godrich; Juan Retamero; Razik Yousfi; Nicolò Fusi; et al. (CoRR, 2025)