A mixture model for expression deconvolution from RNA-seq in heterogeneous tissues. - Yi Li 021; Xiaohui Xie (BMC Bioinform., 2013)

Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity. - Yi Li 021; Xiaohui Xie (Bioinform., 2015)

MixClone: a mixture model for inferring tumor subclonal populations. - Yi Li 021; Xiaohui Xie (BMC Genom., 2015)

Gene expression inference with deep learning. - Yifei Chen; Yi Li 021; Rajiv Narayan; Aravind Subramanian; Xiaohui Xie (Bioinform., 2016)

Machine Learning for High Throughput Genomic Data Analysis. - Yi Li 021 (2016)

Understanding Sequence Conservation With Deep Learning. - Yi Li 021; Daniel Quang; Xiaohui Xie (BCB, 2017)