AAHLDMA: Predicting Drug-Microbe Associations Based on Bridge Graph Learning. - Yaojia Chen; Mengting Niu; Yi Liu 112; Jiacheng Wang 009; Yijie Ding; Quan Zou 001 (ICIC (LNBI 2), 2024)

Spatial Domain Identifying: Graph Attention Network with Two Different Decoders. - Yi Liu 112; Quan Zou 001 (ICIC (LNBI 1), 2024)

MDIC3: Matrix decomposition to infer cell-cell communication. - Yi Liu 112; Yuelei Zhang; Xiao Chang; Xiaoping Liu 002 (Patterns, 2024)

scRNMF: An imputation method for single-cell RNA-seq data by robust and non-negative matrix factorization. - Yuqing Qian; Quan Zou 001; Mengyuan Zhao; Yi Liu 112; Fei Guo 001; Yijie Ding (PLoS Comput. Biol., 2024)

ReAlign-Star: An Optimized Realignment Method for Multiple Sequence Alignment, Targeting Star Algorithm Tools. - Yixiao Zhai; Pinglu Zhang; Yi Liu 112; Quan Zou 001 (ICIC (26), 2025)