RNASeqR: An R Package for Automated Two-Group RNA-Seq Analysis Workflow. - Kuan-Hao Chao; Yi-Wen Hsiao; Yi-Fang Lee; Chien-Yueh Lee; Liang-Chuan Lai; Mong-Hsun Tsai; Tzu-Pin Lu; Eric Y. Chuang (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

ceRNAR: An R package for identification and analysis of ceRNA-miRNA triplets. - Yi-Wen Hsiao; Lin Wang 043; Tzu-Pin Lu (PLoS Comput. Biol., 2022)

Advancing LGBTQ+ inclusion in STEM education and AI research. - Emily Wong; Ryan J. Urbanowicz; Tiffani J. Bright; Nicholas P. Tatonetti; Yi-Wen Hsiao; Xiuzhen Huang; Jason H. Moore; Pei-Chen Peng (Patterns, 2024)