Normalizing Biomedical Name Entities by Similarity-Based Inference Network and De-ambiguity Mining. - Chih-Hsuan Wei; I-Chin Huang; Yi-Yu Hsu; Hung-Yu Kao (BIBE, 2009)

On Deriving an Equation of the Mutation Rate of the Hepatitis B Virus. - Koun-Tem Sun; Chih-Hsuan Wei; Yi-Yu Hsu; Wen-Chun Liu; Ting-Tsung Chang (J. Convergence Inf. Technol., 2010)

CoIN: a network analysis for document triage. - Yi-Yu Hsu; Hung-Yu Kao (Database J. Biol. Databases Curation, 2013)

Using hidden Markov models to predict DNA-binding proteins with sequence and structure information. - Yi-Yu Hsu; Wei-Jhih Chen; Shu Hui Chen; Hung-Yu Kao (Soft Comput., 2014)

Curatable Named-Entity Recognition Using Semantic Relations. - Yi-Yu Hsu; Hung-Yu Kao (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

AuDis: an automatic CRF-enhanced disease normalization in biomedical text. - Hsin-Chun Lee; Yi-Yu Hsu; Hung-Yu Kao (Database J. Biol. Databases Curation, 2016)

Overview of the BioCreative VI text-mining services for Kinome Curation Track. - Julien Gobeill; Pascale Gaudet; Daniel Dopp; Adam Morrone; Indika Kahanda; Yi-Yu Hsu; Chih-Hsuan Wei; Zhiyong Lu; Patrick Ruch (Database J. Biol. Databases Curation, 2018)

Assisting document triage for human kinome curation via machine learning. - Yi-Yu Hsu; Chih-Hsuan Wei; Zhiyong Lu (Database J. Biol. Databases Curation, 2018)

Using deep learning to identify translational research in genomic medicine beyond bench to bedside. - Yi-Yu Hsu; Mindy Clyne; Chih-Hsuan Wei; Muin J. Khoury; Zhiyong Lu (Database J. Biol. Databases Curation, 2019)

Emerging Research Directions of Deep Learning for Pathology Image Analysis. - Pau-Choo Chung; Wei-Jong Yang; Tsung-Hsuan Wu; Chun-Rong Huang; Yi-Yu Hsu (BioCAS, 2022)

The overview of the BioRED (Biomedical Relation Extraction Dataset) track at BioCreative VIII. - Rezarta Islamaj; Po-Ting Lai; Chih-Hsuan Wei; Ling Luo 001; Tiago Melo Almeida; Richard A. A. Jonker; Sofia I R. Conceição; Diana F. Sousa; Cong-Phuoc Phan; Jung-Hsien Chiang; Jiru Li; Dinghao Pan; et al. (Database J. Biol. Databases Curation, 2024)

Real-Time Action Detection in Volleyball Matches Using DETR Architecture. - Mu-Jan Shih; Yi-Yu Hsu (MMM (3), 2025)