The Protein Sequence Design Problem in Canonical Model on 2D and 3D Lattices. - Piotr Berman; Bhaskar DasGupta; Dhruv Mubayi; Robert H. Sloan; György Turán; Yi Zhang 002 (CPM, 2004)

PUMA2 - grid-based high-throughput analysis of genomes and metabolic pathways. - Natalia Maltsev; Elizabeth M. Glass; Dinanath Sulakhe; Alexis A. Rodriguez; Mustafa H. Syed; Tanuja Bompada; Yi Zhang 002; Mark D'Souza (Nucleic Acids Res., 2006)

Semantic Text Classification of Emergent Disease Reports. - Yi Zhang 002; Bing Liu 001 (PKDD, 2007)

Semantic text classification of disease reporting. - Yi Zhang 002; Bing Liu 001 (SIGIR, 2007)

Algorithmic and complexity results for decompositions of biological networks into monotone subsystems. - Bhaskar DasGupta; Germán Andres Enciso; Eduardo D. Sontag; Yi Zhang 002 (Biosyst., 2007)

The inverse protein folding problem on 2D and 3D lattices. - Piotr Berman; Bhaskar DasGupta; Dhruv Mubayi; Robert H. Sloan; György Turán; Yi Zhang 002 (Discret. Appl. Math., 2007)

Sentra: a database of signal transduction proteins for comparative genome analysis. - Mark D'Souza; Elizabeth M. Glass; Mustafa H. Syed; Yi Zhang 002; Alexis A. Rodriguez; Natalia Maltsev; Michael Y. Galperin (Nucleic Acids Res., 2007)