ClusterEnG: an interactive educational web resource for clustering and visualizing high-dimensional data. - Mohith Manjunath; Yi Zhang 055; Yeonsung Kim; Steve H. Yeo; Omar Sobh; Nathan Russell; Christian Followell; Colleen Bushell; Umberto Ravaioli; Jun S. Song (PeerJ Comput. Sci., 2018)

SequencEnG: an interactive knowledge base of sequencing techniques. - Yi Zhang 055; Mohith Manjunath; Yeonsung Kim; Joerg Heintz; Jun S. Song (Bioinform., 2019)

Neural network architecture search with AMBER. - Yi Zhang 055; Yang Liu; X. Shirley Liu (Nat. Mach. Intell., 2021)

TISMO: syngeneic mouse tumor database to model tumor immunity and immunotherapy response. - Zexian Zeng; Cheryl J. Wong; Lin Yang; Nofal Ouardaoui; Dian Li; Wubing Zhang; Shengqing Gu; Yi Zhang 055; Yang Liu; Xiaoqing Wang; Jingxin Fu; Liye Zhou; et al. (Nucleic Acids Res., 2022)

Machine Learning Modeling of Protein-intrinsic Features Predicts Tractability of Targeted Protein Degradation. - Wubing Zhang; Shourya S. Roy Burman; Jiaye Chen; Katherine A. Donovan; Yang Cao; Chelsea Shu; Boning Zhang; Zexian Zeng; Shengqing Gu; Yi Zhang 055; Dian Li; Eric S. Fischer; et al. (Genom. Proteom. Bioinform., 2022)

Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory variation. - Brittany Baur; Junha Shin; Jacob Schreiber; Shilu Zhang; Yi Zhang 055; Mohith Manjunath; Jun S. Song; William Stafford Noble; Sushmita Roy (PLoS Comput. Biol., 2023)