DeepSplice: Deep classification of novel splice junctions revealed by RNA-seq. - Yi Zhang 078; Xinan Liu; James N. MacLeod; Jinze Liu (BIBM, 2016)

Whole mammogram image classification with convolutional neural networks. - Xiaofei Zhang; Yi Zhang 078; Erik Y. Han; Nathan Jacobs; Qiong Han; Xiaoqin Wang; Jinze Liu (BIBM, 2017)

TFmeta: A Machine Learning Approach to Uncover Transcription Factors Governing Metabolic Reprogramming. - Yi Zhang 078; Xiaofei Zhang; Andrew N. Lane; Teresa W.-M. Fan; Jinze Liu (BCB, 2018)

Inferring Gene Regulatory Networks of Metabolic Enzymes Using Gradient Boosted Trees. - Yi Zhang 078; Xiaofei Zhang; Andrew N. Lane; Teresa W.-M. Fan; Jinze Liu (IEEE J. Biomed. Health Informatics, 2020)