iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences. - Yi Zheng 008; Liangjun Zhao; Junping Gao; Zhangjun Fei (BMC Bioinform., 2011)

Tomato Functional Genomics Database: a comprehensive resource and analysis package for tomato functional genomics. - Zhangjun Fei; Je-Gun Joung; Xuemei Tang; Yi Zheng 008; Mingyun Huang; Je Min Lee; Ryan McQuinn; Denise M. Tieman; Rob Alba; Harry J. Klee; James J. Giovannoni (Nucleic Acids Res., 2011)