Protemot: prediction of protein binding sites with automatically extracted geometrical templates. - Darby Tien-Hao Chang; Yi-Zhong Weng; Jung-Hsin Lin; Ming-Jing Hwang; Yen-Jen Oyang (Nucleic Acids Res., 2006)

E1DS: catalytic site prediction based on 1D signatures of concurrent conservation. - Ting-Ying Chien; Darby Tien-Hao Chang; Chien-Yu Chen 001; Yi-Zhong Weng; Chen-Ming Hsu (Nucleic Acids Res., 2008)

A study on the flexibility of enzyme active sites. - Yi-Zhong Weng; Darby Tien-Hao Chang; Yu-Feng Huang; Chih-Wei Lin (BMC Bioinform., 2011)

DBD2BS: connecting a DNA-binding protein with its binding sites. - Ting-Ying Chien; Chih-Kang Lin; Chih-Wei Lin; Yi-Zhong Weng; Chien-Yu Chen 001; Darby Tien-Hao Chang (Nucleic Acids Res., 2012)