Molecular dynamics - Scalable algorithms for molecular dynamics simulations on commodity clusters. - Kevin J. Bowers; Edmond Chow; Huafeng Xu; Ron O. Dror; Michael P. Eastwood; Brent A. Gregersen; John L. Klepeis; István Kolossváry; Mark A. Moraes; Federico D. Sacerdoti; John K. Salmon; Yibing Shan; et al. (SC, 2006)

High-throughput pairwise point interactions in Anton, a specialized machine for molecular dynamics simulation. - Richard H. Larson; John K. Salmon; Ron O. Dror; Martin M. Deneroff; Cliff Young; J. P. Grossman; Yibing Shan; John L. Klepeis; David E. Shaw (HPCA, 2008)

Anton, a special-purpose machine for molecular dynamics simulation. - David E. Shaw; Martin M. Deneroff; Ron O. Dror; Jeffrey Kuskin; Richard H. Larson; John K. Salmon; Cliff Young; Brannon Batson; Kevin J. Bowers; Jack C. Chao; Michael P. Eastwood; Joseph Gagliardo; et al. (Commun. ACM, 2008)

Millisecond-scale molecular dynamics simulations on Anton. - David E. Shaw; Ron O. Dror; John K. Salmon; J. P. Grossman; Kenneth M. Mackenzie; Joseph A. Bank; Cliff Young; Martin M. Deneroff; Brannon Batson; Kevin J. Bowers; Edmond Chow; Michael P. Eastwood; et al. (SC, 2009)

Membrane Interaction of Bound Ligands Contributes to the Negative Binding Cooperativity of the EGF Receptor. - Anton Arkhipov; Yibing Shan; Eric T. Kim; David E. Shaw (PLoS Comput. Biol., 2014)

How does a small molecule bind at a cryptic binding site? - Yibing Shan; Venkatesh P. Mysore; Abba E. Leffler; Eric T. Kim; Shiori Sagawa; David E. Shaw (PLoS Comput. Biol., 2022)

Predicting the Remaining Useful Life of Aircraft Engines Using Spatial and Temporal Attention Mechanisms. - Yibing Shan; Lei Xiao; Xing Fang (IEEE Trans. Instrum. Meas., 2025)