GRONS: a comprehensive genetic resource of nicotine and smoking. - Zhonghai Fang; Yichen Yang 004; Yanshi Hu; Ming D. Li; Ju Wang 007 (Database J. Biol. Databases Curation, 2017)

A universal approach for integrating super large-scale single-cell transcriptomes by exploring gene rankings. - Hongru Shen; Xilin Shen; Mengyao Feng; Dan Wu; Chao Zhang; Yichen Yang 004; Meng Yang; Jiani Hu; Jilei Liu; Wei Wang; Yang Li; Qiang Zhang; et al. (Briefings Bioinform., 2022)

Scalable batch-correction approach for integrating large-scale single-cell transcriptomes. - Xilin Shen; Hongru Shen; Dan Wu; Mengyao Feng; Jiani Hu; Jilei Liu; Yichen Yang 004; Meng Yang; Yang Li; Lei Shi; Kexin Chen; Xiangchun Li (Briefings Bioinform., 2022)

A deep learning model for characterizing protein-RNA interactions from sequences at single-base resolution. - Xilin Shen; Yayan Hou; Xueer Wang; Chunyong Zhang; Jilei Liu; Hongru Shen; Wei Wang; Yichen Yang 004; Meng Yang; Yang Li; Jin Zhang; Yan Sun; et al. (Patterns, 2025)