Preserving Composition and Crystal Structures of Chemical Compounds in Atomic Embedding. - Yifan Ding 001; Daheng Wang; Tim Weninger; Meng Jiang 001 (IEEE BigData, 2019)

HetSeq: Distributed GPU Training on Heterogeneous Infrastructure. - Yifan Ding 001; Nicholas Botzer; Tim Weninger (AAAI, 2021)

Posthoc Verification and the Fallibility of the Ground Truth. - Yifan Ding 001; Nicholas Botzer; Tim Weninger (CoRR, 2021)

Reddit entity linking dataset. - Nicholas Botzer; Yifan Ding 001; Tim Weninger (Inf. Process. Manag., 2021)

Ask-and-Verify: Span Candidate Generation and Verification for Attribute Value Extraction. - Yifan Ding 001; Yan Liang 004; Nasser Zalmout; Xian Li; Christan Grant; Tim Weninger (EMNLP (Industry Track), 2022)

H-EMD: A Hierarchical Earth Mover's Distance Method for Instance Segmentation. - Peixian Liang; Yizhe Zhang 001; Yifan Ding 001; Jianxu Chen 001; Chinedu S. Madukoma; Tim Weninger; Joshua D. Shrout; Danny Z. Chen (IEEE Trans. Medical Imaging, 2022)

ChatEL: Entity Linking with Chatbots. - Yifan Ding 001; Qingkai Zeng 001; Tim Weninger (LREC/COLING, 2024)

EntGPT: Linking Generative Large Language Models with Knowledge Bases. - Yifan Ding 001; Amrit Poudel; Qingkai Zeng 001; Tim Weninger; Balaji Veeramani; Sanmitra Bhattacharya (CoRR, 2024)

Span-Oriented Information Extraction - A Unifying Perspective on Information Extraction. - Yifan Ding 001; Michael Yankoski; Tim Weninger (CoRR, 2024)

Citations and Trust in LLM Generated Responses. - Yifan Ding 001; Matthew Facciani; Ellen Joyce; Amrit Poudel; Sanmitra Bhattacharya; Balaji Veeramani; Sal Aguiñaga; Tim Weninger (AAAI, 2025)

Digital Gatekeepers: Google's Role in Curating Hashtags and Subreddits. - Amrit Poudel; Yifan Ding 001; Tim Weninger; Jürgen Pfeffer (ACL (1), 2025)

AutoData: A Multi-Agent System for Open Web Data Collection. - Tianyi Ma; Yiyue Qian; Zheyuan Zhang; Zehong Wang; Xiaoye Qian; Feifan Bai; Yifan Ding 001; Xuwei Luo; Shinan Zhang; Keerthiram Murugesan; Chuxu Zhang; Yanfang Ye 001 (CoRR, 2025)

Span-Oriented Information Extraction: A Unified Framework. - Yifan Ding 001; Michael Yankoski; Tim Weninger (SIGKDD Explor., 2025)

Cell Instance Segmentation: The Devil Is in the Boundaries. - Peixian Liang; Yifan Ding 001; Yizhe Zhang 001; Jianxu Chen 001; Hao Zheng 006; Hongxiao Wang; Yejia Zhang; Guangyu Meng; Tim Weninger; Michael T. Niemier; X. Sharon Hu; Danny Z. Chen (CoRR, 2025)