Epiviz File Server: Query, transform and interactively explore data from indexed genomic files. - Jayaram Kancherla; Yifan Yang 006; Hyeyun Chae; Héctor Corrada Bravo (Bioinform., 2020)

Lifelong Learning Based Disease Diagnosis on Clinical Notes. - Zifeng Wang 008; Yifan Yang 006; Rui Wen 001; Xi Chen 003; Shao-Lun Huang; Yefeng Zheng 001 (PAKDD (1), 2021)

Comfetch: Federated Learning of Large Networks on Memory-Constrained Clients via Sketching. - Tahseen Rabbani; Brandon Yushan Feng; Yifan Yang 006; Arjun Rajkumar; Amitabh Varshney; Furong Huang (CoRR, 2021)

C-Disentanglement: Discovering Causally-Independent Generative Factors under an Inductive Bias of Confounder. - Xiaoyu Liu 003; Jiaxin Yuan; Bang An 001; Yuancheng Xu; Yifan Yang 006; Furong Huang (NeurIPS, 2023)

Opportunities and challenges for ChatGPT and large language models in biomedicine and health. - Shubo Tian; Qiao Jin 001; Lana Yeganova; Po-Ting Lai; Qingqing Zhu; Xiuying Chen; Yifan Yang 006; Qingyu Chen 001; Won Kim 003; Donald C. Comeau; Rezarta Islamaj; Aadit Kapoor; et al. (Briefings Bioinform., 2024)

Unmasking and Quantifying Racial Bias of Large Language Models in Medical Report Generation. - Yifan Yang 006; Xiaoyu Liu 003; Qiao Jin 001; Furong Huang; Zhiyong Lu (CoRR, 2024)

AgentMD: Empowering Language Agents for Risk Prediction with Large-Scale Clinical Tool Learning. - Qiao Jin 001; Zhizheng Wang; Yifan Yang 006; Qingqing Zhu; Donald Wright; Thomas Huang 003; W. John Wilbur; Zhe He 001; Andrew Taylor; Qingyu Chen 001; Zhiyong Lu (CoRR, 2024)

Comparing E-bike and Conventional Bicycle Use Patterns in a Public Bike Share System: A Case Study of Richmond, VA. - Yifan Yang 006; Elliott Sloate; Nashid Khadem; Celeste Chavis; Vanessa Frías-Martínez (CoRR, 2024)

Adversarial Attacks on Large Language Models in Medicine. - Yifan Yang 006; Qiao Jin 001; Furong Huang; Zhiyong Lu (CoRR, 2024)

Beyond Multiple-Choice Accuracy: Real-World Challenges of Implementing Large Language Models in Healthcare. - Yifan Yang 006; Qiao Jin 001; Qingqing Zhu; Zhizheng Wang; Francisco Erramuspe Álvarez; Nicholas Wan; Benjamin Hou; Zhiyong Lu (CoRR, 2024)

Demystifying Large Language Models for Medicine: A Primer. - Qiao Jin 001; Nicholas Wan; Robert Leaman; Shubo Tian; Zhizheng Wang; Yifan Yang 006; Zifeng Wang 008; Guangzhi Xiong; Po-Ting Lai; Qingqing Zhu; Benjamin Hou; Maame Sarfo-Gyamfi; et al. (CoRR, 2024)

Ensuring Safety and Trust: Analyzing the Risks of Large Language Models in Medicine. - Yifan Yang 006; Qiao Jin 001; Robert Leaman; Xiaoyu Liu 003; Guangzhi Xiong; Maame Sarfo-Gyamfi; Changlin Gong; Santiago Ferrière-Steinert; W. John Wilbur; Xiaojun Li; Jiaxin Yuan; Bang An 001; et al. (CoRR, 2024)

A survey of recent methods for addressing AI fairness and bias in biomedicine. - Yifan Yang 006; Mingquan Lin; Han Zhao 002; Yifan Peng 002; Furong Huang; Zhiyong Lu (J. Biomed. Informatics, 2024)

GeneGPT: augmenting large language models with domain tools for improved access to biomedical information. - Qiao Jin 001; Yifan Yang 006; Qingyu Chen 001; Zhiyong Lu (Bioinform., 2024)

Large Language Models and Causal Inference in Collaboration: A Comprehensive Survey. - Xiaoyu Liu 003; Paiheng Xu; Junda Wu; Jiaxin Yuan; Yifan Yang 006; Yuhang Zhou; Fuxiao Liu; Tianrui Guan; Haoliang Wang; Tong Yu 001; Julian J. McAuley; Wei Ai 002; et al. (NAACL (Findings), 2025)

RAG-Gym: Optimizing Reasoning and Search Agents with Process Supervision. - Guangzhi Xiong; Qiao Jin 001; Xiao Wang; Yin Fang; Haolin Liu; Yifan Yang 006; Fangyuan Chen; Zhixing Song; Dengyu Wang; Minjia Zhang; Zhiyong Lu; Aidong Zhang (CoRR, 2025)

Knowledge-guided Contextual Gene Set Analysis Using Large Language Models. - Zhizheng Wang; Chi-Ping Day; Chih-Hsuan Wei; Qiao Jin 001; Robert Leaman; Yifan Yang 006; Shubo Tian; Aodong Qiu; Yin Fang; Qingqing Zhu; Xinghua Lu 001; Zhiyong Lu (CoRR, 2025)