EMD: an ensemble algorithm for discovering regulatory motifs in DNA sequences. - Jianjun Hu; Yifeng D. Yang; Daisuke Kihara (BMC Bioinform., 2006)

Protein-protein docking using region-based 3D Zernike descriptors. - Vishwesh Venkatraman; Yifeng D. Yang; Lee Sael; Daisuke Kihara (BMC Bioinform., 2009)