Improving subcellular localization prediction using text classification and the gene ontology. - Alona Fyshe; Yifeng Liu 001; Duane Szafron; Russell Greiner; Paul Lu (Bioinform., 2008)

Protein subcellular localization prediction with associative classification and multi-class SVM. - Yifeng Liu 001; Zhaochen Guo; Xiaodi Ke; Osmar R. Zaïane (BCB, 2011)

METAGENassist: a comprehensive web server for comparative metagenomics. - David Arndt; Jianguo Xia; Yifeng Liu 001; You Zhou; Anchi Guo; Joseph A. Cruz; Igor Sinelnikov; Karen Budwill; Camilla L. Nesbø; David S. Wishart (Nucleic Acids Res., 2012)

BacMap: an up-to-date electronic atlas of annotated bacterial genomes. - Joseph A. Cruz; Yifeng Liu 001; Yongjie Liang; You Zhou; Michael Wilson 002; Jonathan J. Dennis; Paul Stothard; Gary H. Van Domselaar; David S. Wishart (Nucleic Acids Res., 2012)

ECMDB: The E. coli Metabolome Database. - Anchi Guo; Timothy Jewison; Michael Wilson 002; Yifeng Liu 001; Craig Knox; Yannick Djoumbou; Patrick Lo; Rupasri Mandal; Ram Krishnamurthy 002; David S. Wishart (Nucleic Acids Res., 2013)

HMDB 3.0 - The Human Metabolome Database in 2013. - David S. Wishart; Timothy Jewison; Anchi Guo; Michael Wilson 002; Craig Knox; Yifeng Liu 001; Yannick Djoumbou; Rupasri Mandal; Farid Aziat; Edison Dong; Souhaila Bouatra; Igor Sinelnikov; et al. (Nucleic Acids Res., 2013)

SMPDB 2.0: Big Improvements to the Small Molecule Pathway Database. - Timothy Jewison; Yilu Su; Fatemeh Miri Disfany; Yongjie Liang; Craig Knox; Adam Maciejewski; Jenna Poelzer; Jessica Huynh; You Zhou; David Arndt; Yannick Djoumbou; Yifeng Liu 001; et al. (Nucleic Acids Res., 2014)

DrugBank 4.0: shedding new light on drug metabolism. - Vivian Law; Craig Knox; Yannick Djoumbou; Timothy Jewison; Anchi Guo; Yifeng Liu 001; Adam Maciejewski; David Arndt; Michael Wilson 002; Vanessa Neveu; Alexandra Tang; Geraldine Gabriel; et al. (Nucleic Acids Res., 2014)

PolySearch2: a significantly improved text-mining system for discovering associations between human diseases, genes, drugs, metabolites, toxins and more. - Yifeng Liu 001; Yongjie Liang; David S. Wishart (Nucleic Acids Res., 2015)

T3DB: the toxic exposome database. - David S. Wishart; David Arndt; Allison Pon; Tanvir Sajed; Anchi Guo; Yannick Djoumbou; Craig Knox; Michael Wilson 002; Yongjie Liang; Jason R. Grant; Yifeng Liu 001; Seyed Ali Goldansaz; et al. (Nucleic Acids Res., 2015)

DrugBank 5.0: a major update to the DrugBank database for 2018. - David S. Wishart; Yannick D. Feunang; An Chi Guo; Elvis J. Lo; Ana Marcu; Jason R. Grant; Tanvir Sajed; Daniel Johnson; Carin Li; Zinat Sayeeda; Nazanin Assempour; Ithayavani Iynkkaran; et al. (Nucleic Acids Res., 2018)

HMDB 4.0: the human metabolome database for 2018. - David S. Wishart; Yannick Djoumbou Feunang; Ana Marcu; An Chi Guo; Kevin Y. H. Liang; Rosa Vázquez-Fresno; Tanvir Sajed; Daniel Johnson; Carin Li; Naama Karu; Zinat Sayeeda; Elvis J. Lo; et al. (Nucleic Acids Res., 2018)