PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database. - Xia Wang; Yihang Shen; Shiwei Wang; Shiliang Li; Weilin Zhang; Xiaofeng Liu 005; Luhua Lai; Jianfeng Pei; Honglin Li 003 (Nucleic Acids Res., 2017)

CavityPlus: a web server for protein cavity detection with pharmacophore modelling, allosteric site identification and covalent ligand binding ability prediction. - Youjun Xu; Shiwei Wang; Qiwan Hu; Shuaishi Gao; Xiaomin Ma; Weilin Zhang; Yihang Shen; Fangjin Chen; Luhua Lai; Jianfeng Pei (Nucleic Acids Res., 2018)

Topological Data Analysis Reveals Principles of Chromosome Structure in Cellular Differentiation. - Natalie Sauerwald; Yihang Shen; Carl Kingsford (WABI, 2019)

Computationally Efficient High-Dimensional Bayesian Optimization via Variable Selection. - Yihang Shen; Carl Kingsford (AutoML, 2023)

Graph-Based Genome Inference from Hi-C Data. - Yihang Shen; Lingge Yu; Yutong Qiu; Tianyu Zhang; Carl Kingsford (RECOMB, 2024)

Revisiting the complexity of and algorithms for the graph traversal edit distance and its variants. - Yutong Qiu; Yihang Shen; Carl Kingsford (Algorithms Mol. Biol., 2024)