Functional module identification by block modeling using simulated annealing with path relinking. - Yijie Wang 003; Xiaoning Qian (BCB, 2012)

Blockmodel module identification in protein interaction networks through Markov random walk. - Yijie Wang 003; Xiaoning Qian (EUSIPCO, 2013)

Identifying overlapping functional modules in biological networks by Markov random walk. - Yijie Wang 003; Xiaoning Qian (GlobalSIP, 2013)

A novel subgradient-based optimization algorithm for blockmodel functional module identification. - Yijie Wang 003; Xiaoning Qian (BMC Bioinform., 2013)

Biological network clustering by robust NMF. - Yijie Wang 003; Xiaoning Qian (BCB, 2014)

Stochastic coordinate descent Frank-Wolfe algorithm for large-scale biological network alignment. - Yijie Wang 003; Xiaoning Qian (GlobalSIP, 2014)

Joint clustering of protein interaction networks by block modeling. - Yijie Wang 003; Xiaoning Qian (ICASSP, 2014)

Functional module identification in protein interaction networks by interaction patterns. - Yijie Wang 003; Xiaoning Qian (Bioinform., 2014)

Joint clustering of protein interaction networks through Markov random walk. - Yijie Wang 003; Xiaoning Qian (BMC Syst. Biol., 2014)

A computational framework for finding functional modules across multiple biological networks. - Yijie Wang 003; Xiaoning Qian (BCB, 2015)

Co-segmentation of multiple images through random walk on graphs. - Yijie Wang 003; Byung-Jun Yoon; Xiaoning Qian (ICASSP, 2016)

Stochastic block coordinate Frank-Wolfe algorithm for large-scale biological network alignment. - Yijie Wang 003; Xiaoning Qian (EURASIP J. Bioinform. Syst. Biol., 2016)

Finding low-conductance sets with dense interactions (FLCD) for better protein complex prediction. - Yijie Wang 003; Xiaoning Qian (BMC Syst. Biol., 2017)

ClusterM: a scalable algorithm for computational prediction of conserved protein complexes across multiple protein interaction networks. - Yijie Wang 003; Hyundoo Jeong; Byung-Jun Yoon; Xiaoning Qian (BMC Genom., 2020)