StructureFold: genome-wide RNA secondary structure mapping and reconstruction in vivo. - Yin Tang; Emil Bouvier; Chun Kit Kwok; Yiliang Ding; Anton Nekrutenko; Philip C. Bevilacqua; Sarah M. Assmann (Bioinform., 2015)

FoldAtlas: a repository for genome-wide RNA structure probing data. - Matthew Norris; Chun Kit Kwok; Jitender Cheema; Matthew Hartley; Richard J. Morris; Sharon Aviran; Yiliang Ding (Bioinform., 2017)

G4Atlas: a comprehensive transcriptome-wide G-quadruplex database. - Haopeng Yu; Yiman Qi; Bibo Yang; Xiaofei Yang 009; Yiliang Ding (Nucleic Acids Res., 2023)

An interpretable RNA foundation model for exploring functional RNA motifs in plants. - Haopeng Yu; Heng Yang 008; Wenqing Sun; Zongyun Yan; Xiaofei Yang 009; Huakun Zhang; Yiliang Ding; Ke Li 001 (Nat. Mac. Intell., 2024)