A flexible model-free prediction-based framework for feature ranking. - Jingyi Jessica Li; Yiling Elaine Chen; Xin Tong (J. Mach. Learn. Res., 2021)

Information-theoretic Classification Accuracy: A Criterion that Guides Data-driven Combination of Ambiguous Outcome Labels in Multi-class Classification. - Chihao Zhang 002; Yiling Elaine Chen; Shihua Zhang; Jingyi Jessica Li (J. Mach. Learn. Res., 2022)

APIR: Aggregating Universal Proteomics Database Search Algorithms for Peptide Identification with FDR Control. - Yiling Elaine Chen; Xinzhou Ge; Kyla Woyshner; Meilu McDermott; Antigoni Manousopoulou; Scott B. Ficarro; Jarrod A. Marto; Kexin Li; Leo David Wang; Jingyi Jessica Li (Genom. Proteom. Bioinform., 2024)