ICBS: a database of interactions between protein chains mediated by ?-sheet formation. - Yimeng Dou; Pierre-François Baisnée; Gianluca Pollastri; Yann Pécout; James Nowick; Pierre Baldi (Bioinform., 2004)

ChemDB: a public database of small molecules and related chemoinformatics resources. - Jonathan H. Chen; Sanjay Joshua Swamidass; Yimeng Dou; Jocelyne Bruand; Pierre Baldi (Bioinform., 2005)

Sourcerer: a search engine for open source code supporting structure-based search. - Sushil Krishna Bajracharya; Trung Chi Ngo; Erik Linstead; Yimeng Dou; Paul Rigor; Pierre Baldi; Cristina Videira Lopes (OOPSLA Companion, 2006)

Co-localization of fluorescent signals using deep learning with Manders overlapping coefficient. - Yimeng Dou; Yi-Hua Tsai; Chih-Chieh Liu; Brad A. Hobson; Pamela J. Lein (Image Processing, 2021)

Pitfalls with Neural Radiance Fields for 3D Freehand Ultrasound Reconstruction. - Yimeng Dou; Tomy Varghese (EMBC, 2024)

A Feasible Method for Computing the Greatest Common Divisor and Least Common Multiple Under Ciphertext Based on Fully Homomorphic Encryption. - Ruoyun Zhao; Xiaodong Li; Li Guan; Bofei Li; Shuoning Liang; Yimeng Dou; Lan Ma; Yuan Cui (CNIOT, 2025)

TUS-REC2024: A Challenge to Reconstruct 3D Freehand Ultrasound Without External Tracker. - Qi Li 030; Shaheer U. Saeed; Yuliang Huang; Mingyuan Luo; Zhongnuo Yan; Jiongquan Chen; Xin Yang 009; Dong Ni 001; Nektarios Winter; Phuc Nguyen; Lucas Steinberger; Caelan Haney; et al. (CoRR, 2025)