Enhance The Performance Of Navigation: A Two-Stage Machine Learning Approach. - Yimin Fan; Zhiyuan Wang; Yuanpeng Lin; Haisheng Tan (BigCom, 2020)

Iterative learning formation control for continuous-time multi-agent systems with randomly varying trial lengths. - Yang Liu; Yimin Fan; Yingmin Jia (J. Frankl. Inst., 2020)

Discovering Representation Sprachbund For Multilingual Pre-Training. - Yimin Fan; Yaobo Liang; Alexandre Muzio; Hany Hassan; Houqiang Li; Ming Zhou 001; Nan Duan (EMNLP (Findings), 2021)

Evaluating Neuron Interpretation Methods of NLP Models. - Yimin Fan; Fahim Dalvi; Nadir Durrani; Hassan Sajjad 001 (NeurIPS, 2023)

GFETM: Genome Foundation-Based Embedded Topic Model for scATAC-seq Modeling. - Yimin Fan; Yu Li 006; Jun Ding; Yue Li (RECOMB, 2024)

Progress and opportunities of foundation models in bioinformatics. - Qing Li 075; Zhihang Hu; Yixuan Wang; Lei Li 051; Yimin Fan; Irwin King; Gengjie Jia; Sheng Wang; Le Song; Yu Li 006 (Briefings Bioinform., 2024)

Learning meaningful representation of single-neuron morphology via large-scale pre-training. - Yimin Fan; Yaxuan Li 002; Yunhua Zhong; Liang Hong; Lei Li 051; Yu Li 006 (Bioinform., 2024)

Progress and Opportunities of Foundation Models in Bioinformatics. - Qing Li 001; Zhihang Hu; Yixuan Wang; Lei Li 051; Yimin Fan; Irwin King; Le Song; Yu Li 006 (CoRR, 2024)

cfDecon: Accurate and Interpretable Methylation-Based Cell Type Deconvolution for Cell-Free DNA. - Yixuan Wang; Jiayi Li; Jingqi Li; Shen Yang; Yuhan Huang; Xinyuan Liu; Yimin Fan; Irwin King; Yumei Li 019; Yu Li 006 (RECOMB, 2025)

Fusion CNN-Transformer Model for Target Counting in Complex Scenarios. - Xingyuan He; Ruiying Wang; Ting Cao; Weiyu Liang; Yimin Fan (Informatica (Slovenia), 2025)

Benchmarking Large Language Models on Multiple Tasks in Bioinformatics NLP with Prompting. - Jiyue Jiang; Pengan Chen; Jiuming Wang; Dongchen He; Ziqin Wei; Liang Hong; Licheng Zong; Sheng Wang; Qinze Yu; Zixian Ma; Yanyu Chen; Yimin Fan; et al. (CoRR, 2025)

DS-ProGen: A Dual-Structure Deep Language Model for Functional Protein Design. - Yanting Li; Jiyue Jiang; Zikang Wang; Ziqian Lin; Dongchen He; Yuheng Shan; Yanruisheng Shao; Jiayi Li; Xiangyu Shi; Jiuming Wang; Yanyu Chen; Yimin Fan; et al. (CoRR, 2025)