Optimal Gaussian Mixture Models of Tissue Intensities in Brain MRI of Patients with Multiple-Sclerosis. - Yiming Xiao 001; Mohak Shah; Simon J. Francis; Douglas L. Arnold; Tal Arbel; D. Louis Collins (MLMI, 2010)

Evaluating intensity normalization on MRIs of human brain with multiple sclerosis. - Mohak Shah; Yiming Xiao 001; Nagesh K. Subbanna; Simon J. Francis; Douglas L. Arnold; D. Louis Collins; Tal Arbel (Medical Image Anal., 2011)

Atlas-Based Segmentation of the Subthalamic Nucleus, Red Nucleus, and Substantia Nigra for Deep Brain Stimulation by Incorporating Multiple MRI Contrasts. - Yiming Xiao 001; Lara Bailey; M. Mallar Chakravarty; Silvain Bériault; Abbas F. Sadikot; G. Bruce Pike; D. Louis Collins (IPCAI, 2012)

A Prospective Evaluation of Computer-Assisted Deep Brain Stimulation Trajectory Planning. - Silvain Bériault; Simon Drouin; Abbas F. Sadikot; Yiming Xiao 001; D. Louis Collins; G. Bruce Pike (CLIP, 2012)

Towards Computer-Assisted Deep Brain Stimulation Targeting with Multiple Active Contacts. - Silvain Bériault; Yiming Xiao 001; Lara Bailey; D. Louis Collins; Abbas F. Sadikot; G. Bruce Pike (MICCAI (1), 2012)

Atlas-Guided Transcranial Doppler Ultrasound Examination with a Neuro-Surgical Navigation System: Case Study. - Yiming Xiao 001; Ian J. Gerard; Vladimir S. Fonov; Dante De Nigris; Catherine Therrien; Bérengère Aubert-Broche; Simon Drouin; Anna Kochanowska; Donatella Tampieri; D. Louis Collins (CLIP@MICCAI, 2015)

Patch-based label fusion segmentation of brainstem structures with dual-contrast MRI for Parkinson's disease. - Yiming Xiao 001; Vladimir S. Fonov; Silvain Bériault; Ian Gerard; Abbas F. Sadikot; G. Bruce Pike; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2015)

Multi-contrast unbiased MRI atlas of a Parkinson's disease population. - Yiming Xiao 001; Vladimir S. Fonov; Silvain Bériault; Fahd Al Subaie; M. Mallar Chakravarty; Abbas F. Sadikot; G. Bruce Pike; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2015)

Automatic SWI Venography Segmentation Using Conditional Random Fields. - Silvain Bériault; Yiming Xiao 001; D. Louis Collins; G. Bruce Pike (IEEE Trans. Medical Imaging, 2015)

User-friendly freehand ultrasound calibration using Lego bricks and automatic registration. - Yiming Xiao 001; Charles X. B. Yan; Simon Drouin; Dante De Nigris; Anna Kochanowska; D. Louis Collins (Int. J. Comput. Assist. Radiol. Surg., 2016)

MARCEL (Inter-Modality Affine Registration with CorrELation Ratio): An Application for Brain Shift Correction in Ultrasound-Guided Brain Tumor Resection. - Nima Masoumi; Yiming Xiao 001; Hassan Rivaz (BrainLes@MICCAI, 2017)

Towards Automatic Collateral Circulation Score Evaluation in Ischemic Stroke Using Image Decompositions and Support Vector Machines. - Yiming Xiao 001; Ali Alamer; Vladimir S. Fonov; Benjamin W. Y. Lo; Donatella Tampieri; D. Louis Collins; Hassan Rivaz; Marta Kersten-Oertel (CMMI/RAMBO/SWITCH@MICCAI, 2017)

Estimation of Strain Elastography from Ultrasound Radio-Frequency Data by Utilizing Analytic Gradient of the Similarity Metric. - Mona Omidyeganeh; Yiming Xiao 001; M. Omair Ahmad; Hassan Rivaz (IEEE Trans. Medical Imaging, 2017)

Nonlinear deformation of tractography in ultrasound-guided low-grade gliomas resection. - Yiming Xiao 001; Live Eikenes; Ingerid Reinertsen; Hassan Rivaz (Int. J. Comput. Assist. Radiol. Surg., 2018)

Correction to: Nonlinear deformation of tractography in ultrasound-guided low-grade gliomas resection. - Yiming Xiao 001; Live Eikenes; Ingerid Reinertsen; Hassan Rivaz (Int. J. Comput. Assist. Radiol. Surg., 2018)

An augmented-reality system prototype for guiding transcranial Doppler ultrasound examination. - Yiming Xiao 001; Simon Drouin; Ian J. Gerard; Vladimir S. Fonov; Bérengère Aubert-Broche; Yuhan Ma; Marta Kersten-Oertel; Donatella Tampieri; D. Louis Collins (Multim. Tools Appl., 2018)

Assessment of Rigid Registration Quality Measures in Ultrasound-Guided Radiotherapy. - Roozbeh Shams; Yiming Xiao 001; François Hébert; Matthew Abramowitz; Rupert Brooks; Hassan Rivaz (IEEE Trans. Medical Imaging, 2018)

Automatic Paraspinal Muscle Segmentation in Patients with Lumbar Pathology Using Deep Convolutional Neural Network. - Wenyao Xia; Maryse Fortin; Joshua Ahn; Hassan Rivaz; Michele C. Battié; Terry M. Peters; Yiming Xiao 001 (MICCAI (2), 2019)

ARENA: Inter-modality affine registration using evolutionary strategy. - Nima Masoumi; Yiming Xiao 001; Hassan Rivaz (Int. J. Comput. Assist. Radiol. Surg., 2019)

A Radiomics-Based Machine Learning Approach to Assess Collateral Circulation in Ischemic Stroke on Non-contrast Computed Tomography. - Mumu Aktar; Yiming Xiao 001; Donatella Tampieri; Hassan Rivaz; Marta Kersten-Oertel (ML-CDS/CLIP@MICCAI, 2020)

Automatic collateral circulation scoring in ischemic stroke using 4D CT angiography with low-rank and sparse matrix decomposition. - Mumu Aktar; Donatella Tampieri; Hassan Rivaz; Marta Kersten-Oertel; Yiming Xiao 001 (Int. J. Comput. Assist. Radiol. Surg., 2020)

Do Public Datasets Assure Unbiased Comparisons for Registration Evaluation? - Jie Luo 003; Guangshen Ma; Sarah F. Frisken; Parikshit Juvekar; Nazim Haouchine; Zhe Xu 012; Yiming Xiao 001; Alexandra J. Golby; Patrick J. Codd; Masashi Sugiyama; William M. Wells III (CoRR, 2020)

Evaluation of MRI to Ultrasound Registration Methods for Brain Shift Correction: The CuRIOUS2018 Challenge. - Yiming Xiao 001; Andreas Maier 001; Wolfgang Wein; Roozbeh Shams; Samuel Kadoury; David Drobny; Marc Modat; Ingerid Reinertsen; Hassan Rivaz; Matthieu Chabanas; Maryse Fortin; Inês Machado; et al. (IEEE Trans. Medical Imaging, 2020)

Data Imputation and Reconstruction of Distributed Parkinson's Disease Clinical Assessments: A Comparative Evaluation of Two Aggregation Algorithms. - Jonatan Reyes; Yiming Xiao 001; Marta Kersten-Oertel (CLIP/DCL/LL-COVID19/PPML@MICCAI, 2021)

Robust Ultrasound-to-Ultrasound Registration for Intra-operative Brain Shift Correction with a Siamese Neural Network. - Amir Pirhadi; Hassan Rivaz; M. Omair Ahmad; Yiming Xiao 001 (ASMUS@MICCAI, 2021)

Multimodal 3D ultrasound and CT in image-guided spinal surgery: public database and new registration algorithms. - Nima Masoumi; Clyde J. Belasso; M. Omair Ahmad; Habib Benali; Yiming Xiao 001; Hassan Rivaz (Int. J. Comput. Assist. Radiol. Surg., 2021)

Learn2Reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning. - Alessa Hering; Lasse Hansen; Tony C. W. Mok; Albert C. S. Chung; Hanna Siebert; Stephanie Häger; Annkristin Lange; Sven Kuckertz; Stefan Heldmann; Wei Shao 008; Sulaiman Vesal; Mirabela Rusu; et al. (CoRR, 2021)

Image Guidance in Deep Brain Stimulation Surgery to Treat Parkinson's Disease: A Comprehensive Review. - Yiming Xiao 001; Jonathan C. Lau; Dimuthu Hemachandra; Greydon Gilmore; Ali R. Khan; Terry M. Peters (IEEE Trans. Biomed. Eng., 2021)

Corrections to "Image Guidance in Deep Brain Stimulation Surgery to Treat Parkinson's Disease: A Comprehensive Review". - Yiming Xiao 001; Jonathan C. Lau; Dimuthu Hemachandra; Greydon Gilmore; Ali R. Khan; Terry M. Peters (IEEE Trans. Biomed. Eng., 2021)

Multi-Modality Breast MRI Segmentation Using NNU-NET For Preoperative Planning Of Robotic Surgery Navigation. - Motaz Alqaoud; John Plemmons; Eric Feliberti; Krishnanand N. Kaipa; Siqin Dong; Gabor Fichtinger; Yiming Xiao 001; Michel A. Audette (ANNSIM, 2022)

nnUNet-based Multi-modality Breast MRI Segmentation and Tissue-Delineating Phantom for Robotic Tumor Surgery Planning. - Motaz Alqaoud; John Plemmons; Eric Feliberti; Siqin Dong; Krishnanand N. Kaipa; Gabor Fichtinger; Yiming Xiao 001; Michel A. Audette (EMBC, 2022)

Weakly Supervised Intracranial Hemorrhage Segmentation Using Hierarchical Combination of Attention Maps from a Swin Transformer. - Amirhossein Rasoulian; Soorena Salari; Yiming Xiao 001 (MLCN@MICCAI, 2022)

Joint Paraspinal Muscle Segmentation and Inter-rater Labeling Variability Prediction with Multi-task TransUNet. - Parinaz Roshanzamir; Hassan Rivaz; Joshua Ahn; Hamza Mirza; Neda Naghdi; Meagan Anstruther; Michele C. Battié; Maryse Fortin; Yiming Xiao 001 (UNSURE@MICCAI, 2022)

A novel prototype for virtual-reality-based deep brain stimulation trajectory planning using voodoo doll annotation and eye-tracking. - Owen Hellum; Yanyu Mu; Marta Kersten-Oertel; Yiming Xiao 001 (Comput. methods Biomech. Biomed. Eng. Imaging Vis., 2022)

RESECT-SEG: Open access annotations of intra-operative brain tumor ultrasound images. - Bahareh Behboodi; François-Xavier Carton; Matthieu Chabanas; Sandrine de Ribaupierre; Ole Solheim; Bodil K. R. Munkvold; Hassan Rivaz; Yiming Xiao 001; Ingerid Reinertsen (CoRR, 2022)

Multi-Material, Approach-Guided, Controlled-Resolution Breast Meshing for Fe-Based Interactive Surgery Simulation. - Motaz Alqaoud; John Plemmons; Eric Feliberti; Krishnanand N. Kaipa; Gabor Fichtinger; Yiming Xiao 001; Tanweer Rashid; Michel A. Audette (ANNSIM, 2023)

VesselShot: Few-shot Learning for Cerebral Blood Vessel Segmentation. - Mumu Aktar; Hassan Rivaz; Marta Kersten-Oertel; Yiming Xiao 001 (MLCN@MICCAI, 2023)

How Inter-rater Variability Relates to Aleatoric and Epistemic Uncertainty: A Case Study with Deep Learning-Based Paraspinal Muscle Segmentation. - Parinaz Roshanzamir; Hassan Rivaz; Joshua Ahn; Hamza Mirza; Neda Naghdi; Meagan Anstruther; Michele C. Battié; Maryse Fortin; Yiming Xiao 001 (UNSURE@MICCAI, 2023)

Towards Multi-modal Anatomical Landmark Detection for Ultrasound-Guided Brain Tumor Resection with Contrastive Learning. - Soorena Salari; Amirhossein Rasoulian; Hassan Rivaz; Yiming Xiao 001 (MICCAI (9), 2023)

FocalErrorNet: Uncertainty-Aware Focal Modulation Network for Inter-modal Registration Error Estimation in Ultrasound-Guided Neurosurgery. - Soorena Salari; Amirhossein Rasoulian; Hassan Rivaz; Yiming Xiao 001 (MICCAI (9), 2023)

Uncertainty-aware transformer model for anatomical landmark detection in paraspinal muscle MRIs. - Soorena Salari; Amirhossein Rasoulian; Michele C. Battié; Maryse Fortin; Hassan Rivaz; Yiming Xiao 001 (Image Processing, 2023)

Is Visual Explanation with Grad-CAM More Reliable for Deeper Neural Networks? A Case Study with Automatic Pneumothorax Diagnosis. - Zirui Qiu; Hassan Rivaz; Yiming Xiao 001 (MLMI@MICCAI (2), 2023)

Dense Error Map Estimation for MRI-Ultrasound Registration in Brain Tumor Surgery Using Swin UNETR. - Soorena Salari; Amirhossein Rasoulian; Hassan Rivaz; Yiming Xiao 001 (CoRR, 2023)

DiffeoRaptor: diffeomorphic inter-modal image registration using RaPTOR. - Nima Masoumi; Hassan Rivaz; M. Omair Ahmad; Yiming Xiao 001 (Int. J. Comput. Assist. Radiol. Surg., 2023)

Robust landmark-based brain shift correction with a Siamese neural network in ultrasound-guided brain tumor resection. - Amir Pirhadi; Soorena Salari; M. Omair Ahmad; Hassan Rivaz; Yiming Xiao 001 (Int. J. Comput. Assist. Radiol. Surg., 2023)

SONIA: an immersive customizable virtual reality system for the education and exploration of brain networks. - Owen Hellum; Christopher Steele; Yiming Xiao 001 (Frontiers Virtual Real., 2023)

Learn2Reg: Comprehensive Multi-Task Medical Image Registration Challenge, Dataset and Evaluation in the Era of Deep Learning. - Alessa Hering; Lasse Hansen; Tony C. W. Mok; Albert C. S. Chung; Hanna Siebert; Stephanie Häger; Annkristin Lange; Sven Kuckertz; Stefan Heldmann; Wei Shao 008; Sulaiman Vesal; Mirabela Rusu; et al. (IEEE Trans. Medical Imaging, 2023)

Deep learning for collateral evaluation in ischemic stroke with imbalanced data. - Mumu Aktar; Jonatan Reyes; Donatella Tampieri; Hassan Rivaz; Yiming Xiao 001; Marta Kersten-Oertel (Int. J. Comput. Assist. Radiol. Surg., 2023)

Assessment of user-interaction strategies for neurosurgical data navigation and annotation in virtual reality. - Owen Hellum; Marta Kersten-Oertel; Yiming Xiao 001 (Virtual Real., 2023)

MedCLIP-SAM: Bridging Text and Image Towards Universal Medical Image Segmentation. - Taha Koleilat; Hojat Asgariandehkordi; Hassan Rivaz; Yiming Xiao 001 (MICCAI (12), 2024)

Parkinson's Disease Detection from Resting State EEG Using Multi-head Graph Structure Learning with Gradient Weighted Graph Attention Explanations. - Christopher Neves; Yong Zeng 004; Yiming Xiao 001 (MLCN@MICCAI, 2024)

Weakly Supervised Intracranial Hemorrhage Segmentation with YOLO and an Uncertainty Rectified Segment Anything Model. - Pascal Spiegler; Amirhossein Rasoulian; Yiming Xiao 001 (SWITCH/ISLES@MICCAI, 2024)

Unsupervised Physics-Inspired Shear Wave Speed Estimation in Ultrasound Elastography. - Ali Kafaei Zad Tehrani; E. G. Sunethra Dayavansha; Yuyang Gu; Ion Candel; Michael Wang; Rimon Tadross; Yiming Xiao 001; Hassan Rivaz; Kai Thomenius; Anthony E. Samir (ASMUS@MICCAI, 2024)

CT-Based Brain Ventricle Segmentation via Diffusion Schrödinger Bridge without target domain ground truths. - Reihaneh Teimouri; Marta Kersten-Oertel; Yiming Xiao 001 (MICCAI (8), 2024)

VRNConnect: Towards More Intuitive Interaction of 3D Brain Connectivity Data in Virtual Environments. - Sepehr Jalayer; Yiming Xiao 001; Marta Kersten-Oertel (VR Workshops, 2024)

Architecture Analysis and Benchmarking of 3D U-Shaped Deep Learning Models for Thoracic Anatomical Segmentation. - Arash Harirpoush; Amirhossein Rasoulian; Marta Kersten-Oertel; Yiming Xiao 001 (IEEE Access, 2024)

SCANED: Siamese collateral assessment network for evaluation of collaterals from ischemic damage. - Mumu Aktar; Yiming Xiao 001; Ali Kafaei Zad Tehrani; Donatella Tampieri; Hassan Rivaz; Marta Kersten-Oertel (Comput. Medical Imaging Graph., 2024)

Joint chest X-ray diagnosis and clinical visual attention prediction with multi-stage cooperative learning: enhancing interpretability. - Zirui Qiu; Hassan Rivaz; Yiming Xiao 001 (CoRR, 2024)

Virtual Reality-Based Preoperative Planning for Optimized Trocar Placement in Thoracic Surgery: A Preliminary Study. - Arash Harirpoush; George Rakovich; Marta Kersten-Oertel; Yiming Xiao 001 (CoRR, 2024)

CAMLD: Contrast-Agnostic Medical Landmark Detection with Consistency-Based Regularization. - Soorena Salari; Arash Harirpoush; Hassan Rivaz; Yiming Xiao 001 (CoRR, 2024)

Reliability of deep learning models for anatomical landmark detection: The role of inter-rater variability. - Soorena Salari; Hassan Rivaz; Yiming Xiao 001 (CoRR, 2024)

BiomedCoOp: Learning to Prompt for Biomedical Vision-Language Models. - Taha Koleilat; Hojat Asgariandehkordi; Hassan Rivaz; Yiming Xiao 001 (CVPR, 2025)

Weakly Supervised Intracranial Aneurysm Detection and Segmentation in MR Angiography via Multi-Task UNet with Vesselness Prior. - Erin Rainville; Amirhossein Rasoulian; Hassan Rivaz; Yiming Xiao 001 (ICCVW, 2025)

Cabld: Contrast-Agnostic Brain Landmark Detection With Consistency-Based Regularization. - Soorena Salari; Arash Harirpoush; Hassan Rivaz; Yiming Xiao 001 (ICCV, 2025)

TextSAM-EUS: Text Prompt Learning for SAM to Accurately Segment Pancreatic Tumor in Endoscopic Ultrasound. - Pascal Spiegler; Taha Koleilat; Arash Harirpoush; Corey S. Miller; Hassan Rivaz; Marta Kersten-Oertel; Yiming Xiao 001 (ICCVW, 2025)

Gamification of Immersive Cervical Rehabilitation Exercises in VR: An Exploratory Study on Chin Tuck and Range of Motion Exercises. - Haitham Abdelsalam; Chanelle Montpetit; Arash Harirpoush; Maryse Fortin; Yiming Xiao 001 (ISMAR-Adjunct, 2025)

CASCADE-FSL: Few-shot learning for collateral evaluation in ischemic stroke. - Mumu Aktar; Donatella Tampieri; Yiming Xiao 001; Hassan Rivaz; Marta Kersten-Oertel (Comput. Medical Imaging Graph., 2025)

MedCLIP-SAMv2: Towards universal text-driven medical image segmentation. - Taha Koleilat; Hojat Asgariandehkordi; Hassan Rivaz; Yiming Xiao 001 (Medical Image Anal., 2025)

PreVISE: an efficient virtual reality system for SEEG surgical planning. - Pascal Spiegler; Haitham Abdelsalam; Owen Hellum; Aristides Hadjinicolaou; Alexander G. Weil; Yiming Xiao 001 (Virtual Real., 2025)

Singular Value Few-shot Adaptation of Vision-Language Models. - Taha Koleilat; Hassan Rivaz; Yiming Xiao 001 (CoRR, 2025)

MRI-Based Brain Age Estimation with Supervised Contrastive Learning of Continuous Representation. - Simon Joseph Clément Crête; Marta Kersten-Oertel; Yiming Xiao 001 (CoRR, 2025)

Medical image classification with KAN-integrated transformers and dilated neighborhood attention. - Omid Nejati Manzari; Hojat Asgariandehkordi; Taha Koleilat; Yiming Xiao 001; Hassan Rivaz (Appl. Soft Comput., 2026)

CLIP-SVD: Efficient and Interpretable Vision-Language Adaptation via Singular Values. - Taha Koleilat; Hassan Rivaz; Yiming Xiao 001 (Trans. Mach. Learn. Res., 2026)

MedCLIPSeg: Probabilistic Vision-Language Adaptation for Data-Efficient and Generalizable Medical Image Segmentation. - Taha Koleilat; Hojat Asgariandehkordi; Omid Nejati Manzari; Berardino Barile; Yiming Xiao 001; Hassan Rivaz (CoRR, 2026)

Bridging the Gaps: Imputation of Parkinson's Disease Clinical Assessments With Federated Learning. - Jonatan Reyes; Alireza Noroozi; Yiming Xiao 001; Marta Kersten-Oertel (IEEE J. Biomed. Health Informatics, 2026)

DINOMotion: Advanced Robust Tissue Motion Tracking With DINOv2 in 2D-Cine MRI-Guided Radiotherapy. - Soorena Salari; Catherine Spino; Laurie-Anne Pharand; Fabienne Lathuilière; Hassan Rivaz; Silvain Bériault; Yiming Xiao 001 (IEEE Trans. Biomed. Eng., 2026)

Towards user-centered interactive medical image segmentation in VR with an assistive AI agent. - Pascal Spiegler; Arash Harirpoush; Yiming Xiao 001 (Virtual Real., 2026)

NeuroVase: A Tangible Mobile Augmented Reality Learning System for Neurovascular Anatomy and Stroke Education. - Bahar Jahani; Matsanga Leyila Kaseka; Marta Kersten-Oertel; Yiming Xiao 001 (CoRR, 2026)

Sparse Spectral LoRA: Routed Experts for Medical VLMs. - Omid Nejati Manzari; Hojat Asgariandehkordi; Taha Koleilat; Yiming Xiao 001; Hassan Rivaz (CoRR, 2026)

VesselSim: learning 3D blood vessel segmentation without expert annotations. - Erin Rainville; Melissa Ananian; Tristan Mirolla; Hassan Rivaz; Yiming Xiao 001 (CoRR, 2026)

Evi-Steer: Learning to Steer Biomedical Vision-Language Models through Efficient and Generalizable Evidential Tuning. - Taha Koleilat; Hassan Rivaz; Yiming Xiao 001 (CoRR, 2026)