Exploring drug combinations in genetic interaction network. - Yin-Ying Wang; Ke-Jia Xu; Jiangning Song; Xing-Ming Zhao (BMC Bioinform., 2012)

Predicting Therapeutic Targets with Integration of Heterogeneous Data Sources. - Yan-Fen Dai; Yin-Ying Wang; Xing-Ming Zhao (PRIB, 2013)

PCID: A Novel Approach for Predicting Disease Comorbidity by Integrating Multi-Scale Data. - Feng He 004; Guanghui Zhu; Yin-Ying Wang; Xing-Ming Zhao; De-Shuang Huang (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

DrPOCS: Drug Repositioning Based on Projection Onto Convex Sets. - Yin-Ying Wang; Chunfeng Cui; Liqun Qi 001; Hong Yan 001; Xing-Ming Zhao (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

Integration of millions of transcriptomes using batch-aware triplet neural networks. - Lukas M. Simon; Yin-Ying Wang; Zhongming Zhao (Nat. Mach. Intell., 2021)

CeDR Atlas: a knowledgebase of cellular drug response. - Yin-Ying Wang; Hongen Kang; Tianyi Xu; Lili Hao; Yiming Bao; Peilin Jia (Nucleic Acids Res., 2022)