Comparison of Two Schemes for Automatic Keyword Extraction from MEDLINE for Functional Gene Clustering. - Ying Liu 007; Brian J. Ciliax; Karin Borges; Venu Dasigi; Ashwin Ram 001; Shamkant B. Navathe; Ray Dingledine (CSB, 2004)

Text Mining Functional Keywords Associated with Genes. - Ying Liu 007; Martin Brandon; Shamkant B. Navathe; Ray Dingledine; Brian J. Ciliax (MedInfo, 2004)

A Comparative Study on Feature Selection Methods for Drug Discovery. - Ying Liu 007 (J. Chem. Inf. Model., 2004)

Active Learning with Support Vector Machine Applied to Gene Expression Data for Cancer Classification. - Ying Liu 007 (J. Chem. Inf. Model., 2004)

The design and implementation of a runtime system for graph-oriented parallel and distributed programming. - Jiannong Cao 001; Ying Liu 007; Li Xie 001; Bing Mao 001; Kang Zhang 001 (J. Syst. Softw., 2004)

Serum proteomic Pattern Analysis for Early cancer Detection. - Ying Liu 007 (Advances in Bioinformatics and Its Applications, 2005)

Investigation into Biomedical Literature Classification Using Support Vector Machines. - Nalini Polavarapu; Shamkant B. Navathe; Ramprasad Ramnarayanan; Abrar ul Haque; Saurav Sahay; Ying Liu 007 (CSB, 2005)

Drug design by machine learning: ensemble learning for QSAR modeling. - Ying Liu 007 (ICMLA, 2005)

Text Mining Biomedical Literature for Discovering Gene-to-Gene Relationships: A Comparative Study of Algorithms. - Ying Liu 007; Shamkant B. Navathe; Jorge Civera; Venu Dasigi; Ashwin Ram 001; Brian J. Ciliax; Ray Dingledine (IEEE ACM Trans. Comput. Biol. Bioinform., 2005)

Text Mining Biomedical Literature for Genomic Knowledge Discovery. - Ying Liu 007 (2005)

Oasis: A Mapping and Integration Framework for Biomedical Ontologies. - Guang-Lei Song; Yu Qian; Ying Liu 007; Kang Zhang 001 (CBMS, 2006)

Text analysis of MEDLINE for discovering functional relationships among genes: evaluation of keyword extraction weighting schemes. - Ying Liu 007; Shamkant B. Navathe; Alex Pivoshenko; Venu Dasigi; Ray Dingledine; Brian J. Ciliax (Int. J. Data Min. Bioinform., 2006)

BIRD: Biomedical Information Integration and Discovery with Semantic Web Services. - Juan Miguel Gómez 001; Mariano Rico; Francisco García-Sánchez 001; Ying Liu 007; Marília Terra de Mello (IWINAC (2), 2007)

Modeling nonlinearity in dilution design microarray data. - Xiuwen Zheng 001; Hung-Chung Huang; Wenyuan Li 005; Peng Liu 007; Quan-Zhen Li; Ying Liu 007 (Bioinform., 2007)

Model Formulation: A Document Clustering and Ranking System for Exploring MEDLINE Citations. - Yongjing Lin; Wenyuan Li 005; Keke Chen; Ying Liu 007 (J. Am. Medical Informatics Assoc., 2007)

Biomarker Discovery and Visualization in gene Expression Data with Efficient Generalized Matrix Approximations. - Wenyuan Li 005; Yanxiong Peng; Hung-Chung Huang; Ying Liu 007 (J. Bioinform. Comput. Biol., 2007)

Dynamical Systems for Discovering Protein Complexes and Functional Modules from Biological Networks. - Wenyuan Li 005; Ying Liu 007; Hung-Chung Huang; Yanxiong Peng; Yongjing Lin; Wee Keong Ng; Kok-Leong Ong (IEEE ACM Trans. Comput. Biol. Bioinform., 2007)

Enhancing the Effectiveness of Clustering with Spectra Analysis. - Wenyuan Li 005; Wee Keong Ng; Ying Liu 007; Kok-Leong Ong (IEEE Trans. Knowl. Data Eng., 2007)

SYMBIOS: A Semantic Pervasive Services Platform for Biomedical Information Integration. - Myriam Mencke; Ismael Rivera; Juan Miguel Gómez 001; Giner Alor-Hernández; Rubén Posada-Gómez; Ying Liu 007 (ICAISC, 2008)

Spectral geometry for simultaneously clustering and ranking query search results. - Ying Liu 007; Wenyuan Li 005; Yongjing Lin; Liping Jing (SIGIR, 2008)

Visualizing microarray Data for Biomarker Discovery by Matrix Reordering and Replicator Dynamics. - Ying Liu 007; Wenyuan Li 005 (J. Bioinform. Comput. Biol., 2008)

A Cryptographic Approach to Securely Share and Query Genomic Sequences. - Murat Kantarcioglu; Wei Jiang 026; Ying Liu 007; Bradley A. Malin (IEEE Trans. Inf. Technol. Biomed., 2008)

Structure discovery in PPI networks using pattern-based network decomposition. - Philip Bachman; Ying Liu 007 (Bioinform., 2009)

Editorial for the special issue of knowledge discovery and management in biomedical information systems. - Ying Liu 004; Lawrence Wing-Chi Chan; Chi-Ren Shyu; Ying Liu 007 (Inf. Syst. Frontiers, 2009)

Construction of gene networks with hybrid approach from expression profile and gene ontology. - Liping Jing; Michael K. Ng 001; Ying Liu 007 (IEEE Trans. Inf. Technol. Biomed., 2010)

A tripartite Clustering Analysis on microRNA, gene and Disease Model. - Chengcheng Shen; Ying Liu 007 (J. Bioinform. Comput. Biol., 2012)

Promoting student engagement in fundamental Java programming classes using a poll software system: faculty poster abstract. - Ying Liu 007 (J. Comput. Sci. Coll., 2015)

PFC: An Efficient Soft Graph Clustering Method for PPI Networks Based on Purifying and Filtering the Coupling Matrix. - Ying Liu 007; Amir K. Foroushani (ICIC (1), 2016)

Securing Birth Certificate Documents with DNA Profiles. - Mark Tannian; Christina Schweikert; Ying Liu 007 (HICSS, 2017)

PollEverywhere: a web 2.0 tool to promote student engagement in classrooms. - Ying Liu 007 (J. Comput. Sci. Coll., 2017)

A Systems Security Analysis of Issuance and Verification of Birth Documents Enhanced with DNA Profiles. - Mark Tannian; Christina Schweikert; Ying Liu 007 (J. Interconnect. Networks, 2017)

The Challenges of Business Analytics: Successes and Failures. - Ying Liu 007; Henry Han; Joan DeBello (HICSS, 2018)

Academic service learning in undergraduate and graduate computer science courses to foster engagement and real world experience. - Ying Liu 007; Joan E. DeBello (J. Comput. Sci. Coll., 2018)

A Context Free Gramma for Key Noun-Phrase Extraction from Text. - Ying Liu 007 (HICSS, 2019)