A novel network model for molecular prognosis. - Ying-Wooi Wan; Swetha Bose; James Denvir; Nancy Lan Guo (BCB, 2010)

Network-based identification of smoking-associated gene signature for lung cancer. - Ying-Wooi Wan; Changchang Xiao; Nancy Lan Guo (BIBM, 2010)

A novel network model identified a 13-gene lung cancer prognostic signature. - Nancy Lan Guo; Ying-Wooi Wan; Swetha Bose; James Denvir; Michael L. Kashon; Michael E. Andrew (Int. J. Comput. Biol. Drug Des., 2011)

Pathway-based identification of a smoking associated 6-gene signature predictive of lung cancer risk and survival. - Nancy Lan Guo; Ying-Wooi Wan (Artif. Intell. Medicine, 2012)

Identifying cancer biomarkers through a network regularized Cox model. - Ying-Wooi Wan; John Nagorski; Genevera I. Allen; Zhaohui Li; Zhandong Liu (GENSiPS, 2013)

Digital sorting of complex tissues for cell type-specific gene expression profiles. - Yi Zhong; Ying-Wooi Wan; Kaifang Pang; Lionel M. L. Chow; Zhandong Liu (BMC Bioinform., 2013)

Combinatorial therapy discovery using mixed integer linear programming. - Kaifang Pang; Ying-Wooi Wan; William T. Choi; Lawrence A. Donehower; Jingchun Sun; Dhruv Pant; Zhandong Liu (Bioinform., 2014)

TCGA2STAT: simple TCGA data access for integrated statistical analysis in R. - Ying-Wooi Wan; Genevera I. Allen; Zhandong Liu (Bioinform., 2016)

XMRF: an R package to fit Markov Networks to high-throughput genetics data. - Ying-Wooi Wan; Genevera I. Allen; Yulia Baker; Eunho Yang; Pradeep Ravikumar; Matthew Anderson 002; Zhandong Liu (BMC Syst. Biol., 2016)

Comprehensive evaluation of RNA-seq quantification methods for linearity. - Haijing Jin; Ying-Wooi Wan; Zhandong Liu (BMC Bioinform., 2017)

CoRegNet: unraveling gene co-regulation networks from public RNA-Seq repositories using a beta-binomial statistical model. - Jiasheng Wang; Ying-Wooi Wan; Rami Al-Ouran; Meichen Huang; Zhandong Liu (Briefings Bioinform., 2024)