dbPSP: a curated database for protein phosphorylation sites in prokaryotes. - Zhicheng Pan; Bangshan Wang; Ying Zhang 052; Yongbo Wang; Shahid Ullah; Jian Ren 002; Zexian Liu; Yu Xue 001 (Database J. Biol. Databases Curation, 2015)

Computational prediction of methylation types of covalently modified lysine and arginine residues in proteins. - Wankun Deng; Yongbo Wang; Lili Ma; Ying Zhang 052; Shahid Ullah; Yu Xue 001 (Briefings Bioinform., 2017)

CGDB: a database of circadian genes in eukaryotes. - Shujing Li; Ke Shui; Ying Zhang 052; Yongqiang Lv; Wankun Deng; Shahid Ullah; Luoying Zhang; Yu Xue 001 (Nucleic Acids Res., 2017)

WERAM: a database of writers, erasers and readers of histone acetylation and methylation in eukaryotes. - Yang Xu; Shuang Zhang; Shaofeng Lin; Yaping Guo; Wankun Deng; Ying Zhang 052; Yu Xue 001 (Nucleic Acids Res., 2017)

iUUCD 2.0: an update with rich annotations for ubiquitin and ubiquitin-like conjugations. - Jiaqi Zhou 003; Yang Xu; Shaofeng Lin; Yaping Guo; Wankun Deng; Ying Zhang 052; Anyuan Guo; Yu Xue 001 (Nucleic Acids Res., 2018)

GPS 5.0: An Update on the Prediction of Kinase-specific Phosphorylation Sites in Proteins. - Chenwei Wang; Hao-Dong Xu; Shaofeng Lin; Wankun Deng; Jiaqi Zhou 003; Ying Zhang 052; Ying Shi; Di Peng; Yu Xue 001 (Genom. Proteom. Bioinform., 2020)