TEST: A Web-Based T-Cell Epitope Search Tool. - Yingdong Zhao; Lenny Grover; Richard M. Simon (CBMS, 2001)

Application of support vector machines for T-cell epitopes prediction. - Yingdong Zhao; Clemencia Pinilla; Danila Valmori; Roland Martin; Richard M. Simon (Bioinform., 2003)

T-Cell Epitope Prediction with Combinatorial Peptide Libraries. - Myong-Hee Sung; Yingdong Zhao; Roland Martin; Richard M. Simon (J. Comput. Biol., 2003)

An adaptive method for cDNA microarray normalization. - Yingdong Zhao; Ming-Chung Li; Richard M. Simon (BMC Bioinform., 2005)

The variations characteristics and respond to climate change of runoff of Main Rivers in Gansu. - Jianying Feng; Jinsong Wang; Yingdong Zhao; Denrong Lu (IGARSS, 2007)

Gene Set Expression Comparison kit for BRB-ArrayTools. - Xiaojiang Xu; Yingdong Zhao; Richard M. Simon (Bioinform., 2008)

Non-negative matrix factorization of gene expression profiles: a plug-in for BRB-ArrayTools. - Qihao Qi; Yingdong Zhao; Ming-Chung Li; Richard M. Simon (Bioinform., 2009)

Partial Immunity and Vaccination for Influenza. - Xinan Zhang; Yingdong Zhao; Avidan U. Neumann (J. Comput. Biol., 2010)

OpenGeneMed: a portable, flexible and customizable informatics hub for the coordination of next-generation sequencing studies in support of precision medicine trials. - Alida Palmisano; Yingdong Zhao; Ming-Chung Li; Eric C. Polley; Richard M. Simon (Briefings Bioinform., 2017)

Colored Petri Net Reusing for Service Function Chaining Validation. - Zhenyu Liu; Xuanyu Lou; Yajun Cui; Yingdong Zhao; Hua Li (COMPSAC, 2022)

TPWshiny: an interactive R/Shiny app to explore cell line transcriptional responses to anti-cancer drugs. - Peter Zhang; Alida Palmisano; Ravindra Kumar; Ming-Chung Li; James H. Doroshow; Yingdong Zhao (Bioinform., 2022)