Mining frequent pyramid patterns from time series transaction data with custom constraints. - Wei Wang; Jing Tian; Fang Lv; Guodong Xin; Yingfan Ma; Bailing Wang (Comput. Secur., 2021)

Boosting Whole Slide Image Classification from the Perspectives of Distribution, Correlation and Magnification. - Linhao Qu; Zhiwei Yang; Minghong Duan; Yingfan Ma; Shuo Wang 011; Manning Wang; Zhijian Song (ICCV, 2023)

OpenAL: An Efficient Deep Active Learning Framework for Open-Set Pathology Image Classification. - Linhao Qu; Yingfan Ma; Zhiwei Yang; Manning Wang; Zhijian Song (MICCAI (2), 2023)

Rethinking Multiple Instance Learning for Whole Slide Image Classification: A Good Instance Classifier is All You Need. - Linhao Qu; Yingfan Ma; Xiaoyuan Luo; Manning Wang; Zhijian Song (CoRR, 2023)

ProteinMAE: masked autoencoder for protein surface self-supervised learning. - Mingzhi Yuan; Ao Shen; Kexue Fu 001; Jiaming Guan; Yingfan Ma; Qin Qiao; Manning Wang (Bioinform., 2023)

Transformer-Based Video-Structure Multi-Instance Learning for Whole Slide Image Classification. - Yingfan Ma; Xiaoyuan Luo; Kexue Fu 001; Manning Wang (AAAI, 2024)

Complementary multi-modality molecular self-supervised learning via non-overlapping masking for property prediction. - Ao Shen; Mingzhi Yuan; Yingfan Ma; Jie Du; Manning Wang (Briefings Bioinform., 2024)

PGBind: pocket-guided explicit attention learning for protein-ligand docking. - Ao Shen; Mingzhi Yuan; Yingfan Ma; Jie Du; Manning Wang (Briefings Bioinform., 2024)

ProteinF3S: boosting enzyme function prediction by fusing protein sequence, structure, and surface. - Mingzhi Yuan; Ao Shen; Yingfan Ma; Jie Du; Bohan An; Manning Wang (Briefings Bioinform., 2024)

Rethinking Multiple Instance Learning: Developing an Instance-Level Classifier via Weakly-Supervised Self-Training. - Yingfan Ma; Xiaoyuan Luo; Mingzhi Yuan; Xinrong Chen; Manning Wang (CoRR, 2024)

SS-Pro: a simplified Siamese contrastive learning approach for protein surface representation. - Ao Shen; Mingzhi Yuan; Yingfan Ma; Manning Wang (Frontiers Comput. Sci., 2024)

Rethinking Multiple Instance Learning for Whole Slide Image Classification: A Good Instance Classifier Is All You Need. - Linhao Qu; Yingfan Ma; Xiaoyuan Luo; Qinhao Guo; Manning Wang; Zhijian Song (IEEE Trans. Circuits Syst. Video Technol., 2024)

SeLa-MIL: Developing an instance-level classifier via weakly-supervised self-training for whole slide image classification. - Yingfan Ma; Mingzhi Yuan; Ao Shen; Xiaoyuan Luo; Bohan An; Xinrong Chen; Manning Wang (Comput. Methods Programs Biomed., 2025)

ABench-Physics: Benchmarking Physical Reasoning in LLMs via High-Difficulty and Dynamic Physics Problems. - Yiming Zhang; Yingfan Ma; Yanmei Gu; Zhengkai Yang; Yihong Zhuang; Feng Wang; Zenan Huang; Yuanyuan Wang; Chao Huang; Bowen Song; Cheng Lin; Junbo Zhao (CoRR, 2025)