IDP-denovo: de novo transcriptome assembly and isoform annotation by hybrid sequencing. - Shuhua Fu; Yingke Ma; Hui Yao; Zhichao Xu 003; Shilin Chen; Jingyuan Song; Kin Fai Au (Bioinform., 2018)

The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR. - Shuhui Song; Lina Ma; Dong Zou; Dongmei Tian; Cuiping Li 004; Junwei Zhu; Meili Chen; Anke Wang; Yingke Ma; Mengwei Li; Xufei Teng; Ying Cui; et al. (Genom. Proteom. Bioinform., 2020)

EWAS Data Hub: a resource of DNA methylation array data and metadata. - Zhuang Xiong; Mengwei Li; Fei Yang; Yingke Ma; Jian Sang; Rujiao Li; Zhaohua Li; Zhang Zhang 002; Yiming Bao (Nucleic Acids Res., 2020)

Genome Warehouse: A Public Repository Housing Genome-scale Data. - Meili Chen; Yingke Ma; Song Wu; Xinchang Zheng; Hongen Kang; Jian Sang; Xingjian Xu; Lili Hao; Zhaohua Li; Zheng Gong; Jing-Fa Xiao; Zhang Zhang 002; et al. (Genom. Proteom. Bioinform., 2021)

Aging Atlas: a multi-omics database for aging biology. - Guang-Hui Liu; Yiming Bao; Jing Qu; Weiqi Zhang; Tao Zhang; Wang Kang; Fei Yang; Qianzhao Ji; Xiaoyu Jiang; Yingke Ma; Shuai Ma; Zunpeng Liu; et al. (Nucleic Acids Res., 2021)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Shuhui Song; Lina Ma; et al. (Nucleic Acids Res., 2021)

EWAS Open Platform: integrated data, knowledge and toolkit for epigenome-wide association study. - Zhuang Xiong; Fei Yang; Mengwei Li; Yingke Ma; Wei Zhao 040; Guoliang Wang; Zhaohua Li; Xinchang Zheng; Dong Zou; Wenting Zong; Hongen Kang; Yaokai Jia; et al. (Nucleic Acids Res., 2022)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Jingyao Zeng; Yadong Zhang; et al. (Nucleic Acids Res., 2022)

scMethBank: a database for single-cell whole genome DNA methylation maps. - Wenting Zong; Hongen Kang; Zhuang Xiong; Yingke Ma; Tong Jin 004; Zheng Gong; Lizhi Yi; Mochen Zhang; Song Wu; Guoliang Wang; Yiming Bao; Rujiao Li (Nucleic Acids Res., 2022)

MethBank 4.0: an updated database of DNA methylation across a variety of species. - Mochen Zhang; Wenting Zong; Dong Zou; Guoliang Wang; Wei Zhao 040; Fei Yang; Song Wu; Xinran Zhang; Xutong Guo; Yingke Ma; Zhuang Xiong; Zhang Zhang 002; et al. (Nucleic Acids Res., 2023)

DRED: A Comprehensive Database of Genes Related to Repeat Expansion Diseases. - Qingqing Shi; Min Dai; Yingke Ma; Jun Liu; Xiuying Liu; Xiu-Jie Wang (Genom. Proteom. Bioinform., 2024)

The Updated Genome Warehouse: Enhancing Data Value, Security, and Usability to Address Data Expansion. - Yingke Ma; Xuetong Zhao; Yaokai Jia; Zhenxian Han; Caixia Yu; Zhuojing Fan; Zhang Zhang 002; Jingfa Xiao; Wenming Zhao; Yiming Bao; Meili Chen (Genom. Proteom. Bioinform., 2025)