The Mutation Process of Microsatellites During the Polymerase Chain Reaction. - Yinglei Lai; Deepali Shinde; Norman Arnheim; Fengzhu Sun (J. Comput. Biol., 2003)

A statistical method for identifying differential gene-gene co-expression patterns. - Yinglei Lai; Baolin Wu; Liang Chen; Hongyu Zhao 003 (Bioinform., 2004)

A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data. - Yinglei Lai; Hongyu Zhao 003 (Comput. Biol. Chem., 2005)

Erratum to "A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data": [Comput. Biol. Chem. 29(2005) 47-54] - Yinglei Lai; Hongyu Zhao (Comput. Biol. Chem., 2005)

A statistical method for estimating the proportion of differentially expressed genes. - Yinglei Lai (Comput. Biol. Chem., 2006)

On the identification of differentially expressed genes: Improving the generalized F-statistics for Affymetrix microarray gene expression data. - Yinglei Lai (Comput. Biol. Chem., 2006)

An ensemble approach to microarray data-based gene prioritization after missing value imputation. - Dong Hua; Yinglei Lai (Bioinform., 2007)

A mixture model approach to the tests of concordance and discordance between two large-scale experiments with two-sample groups. - Yinglei Lai; Bao-Ling Adam; Robert H. Podolsky; Jin-Xiong She (Bioinform., 2007)

Conservative adjustment of permutation p-values when the number of permutations is limited. - Yinglei Lai (Int. J. Bioinform. Res. Appl., 2007)

Genome-wide co-expression based prediction of differential expressions. - Yinglei Lai (Bioinform., 2008)

A statistical framework for integrating two microarray data sets in differential expression analysis. - Yinglei Lai; Sarah E. Eckenrode; Jin-Xiong She (BMC Bioinform., 2009)

A censored beta mixture model for the estimation of the proportion of non-differentially expressed genes. - Anastasios Markitsis; Yinglei Lai (Bioinform., 2010)

Differential expression analysis of Digital Gene Expression data: RNA-tag filtering, comparison of t-type tests and their genome-wide co-expression based adjustments. - Yinglei Lai (Int. J. Bioinform. Res. Appl., 2010)

The analysis of ordered changes of gene expression and gene-gene co-expression patterns. - Yinglei Lai (ICCABS, 2011)

Change-Point Analysis of Paired Allele-Specific Copy Number Variation Data. - Yinglei Lai (J. Comput. Biol., 2012)

Concordant integrative gene set enrichment analysis of multiple large-scale two-sample expression data sets. - Yinglei Lai; Fanni Zhang; Tapan K. Nayak; Reza Modarres; Norman H. Lee; Timothy A. McCaffrey (BMC Genom., 2014)

An efficient concordant integrative analysis of multiple large-scale two-sample expression data sets. - Yinglei Lai; Fanni Zhang; Tapan K. Nayak; Reza Modarres; Norman H. Lee; Timothy A. McCaffrey (Bioinform., 2017)

A statistical method for the conservative adjustment of false discovery rate (q-value). - Yinglei Lai (BMC Bioinform., 2017)

A distance-type measure approach to the analysis of copy number variation in DNA sequencing data. - Bipasa Biswas; Yinglei Lai (BMC Genom., 2019)

A censored-Poisson model based approach to the analysis of RNA-seq data. - Xing Chen; Yinglei Lai (Quant. Biol., 2020)

Improvements Achieved by Multiple Imputation for Single-Cell RNA-Seq Data in Clustering Analysis and Differential Expression Analysis. - Mengqiu Zhu; Yinglei Lai (J. Comput. Biol., 2022)

A model-based approach to assess reproducibility for large-scale high-throughput MRI-based studies. - Zeyu Jiao; Yinglei Lai; Jujiao Kang; Weikang Gong; Liang Ma; Tianye Jia; Chao Xie; Shitong Xiang; Wei Cheng 002; Andreas Heinz; Sylvane Desrivières; Gunter Schumann; et al. (NeuroImage, 2022)

A knowledge-transfer-based approach for combining ordinal regression and medical scoring system in the early prediction of sepsis with electronic health records. - Yu Ji; Kaipeng Wang; Yuan Yuan; Yueguo Wang; Qingyuan Liu; Yulan Wang; Jian Sun; Wenwen Wang; Huanli Wang; Shusheng Zhou; Kui Jin; Mengping Zhang; et al. (Comput. Biol. Chem., 2024)

A novel approach to the analysis of Overall Survival (OS) as response with Progression-Free Interval (PFI) as condition based on the RNA-seq expression data in The Cancer Genome Atlas (TCGA). - Bo Lin; Kaipeng Wang; Yuan Yuan; Yueguo Wang; Qingyuan Liu; Yulan Wang; Jian Sun; Wenwen Wang; Huanli Wang; Shusheng Zhou; Kui Jin; Mengping Zhang; et al. (BMC Bioinform., 2024)

An order-preserving batch-effect correction method based on a monotonic deep learning framework. - Mingxuan Zhang; Yinglei Lai (Briefings Bioinform., 2025)