Shape classification of malignant lymphomas and leukemia by morphological watersheds and ARMA modeling. - Mehmet Celenk; Yinglei Song; Limin Ma; Min Zhou (Image Processing, 2003)

Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes. - Yinglei Song; Chunmei Liu; Russell L. Malmberg; Fangfang Pan; Liming Cai (CSB, 2005)

MDGA: motif discovery using a genetic algorithm. - Dongsheng Che; Yinglei Song; Khaled Rasheed (GECCO, 2005)

Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment. - Yinglei Song; Chunmei Liu; Xiuzhen Huang; Russell L. Malmberg; Ying Xu 001; Liming Cai (WABI, 2005)

RNA Structural Homology Search with a Succinct Stochastic Grammar Model. - Yinglei Song; Jizhen Zhao; Chunmei Liu; Kan Liu; Russell L. Malmberg; Liming Cai (J. Comput. Sci. Technol., 2005)

Profiling and Searching for RNA Pseudoknot Structures in Genomes. - Chunmei Liu; Yinglei Song; Russell L. Malmberg; Liming Cai (Trans. Comp. Sys. Biology, 2005)

Exact Algorithms for Finding the Minimum Independent Dominating Set in Graphs. - Chunmei Liu; Yinglei Song (ISAAC, 2006)

Peptide sequence tag-based blind identification of post-translational modifications with point process model. - Chunmei Liu; Bo Yan; Yinglei Song; Ying Xu 001; Liming Cai (ISMB (Supplement of Bioinformatics), 2006)

Fast De novo Peptide Sequencing and Spectral Alignment via Tree Decomposition. - Chunmei Liu; Yinglei Song; Bo Yan; Ying Xu 001; Liming Cai (Pacific Symposium on Biocomputing, 2006)

Phylogenetic Network Inferences Through Efficient Haplotyping. - Yinglei Song; Chunmei Liu; Russell L. Malmberg; Liming Cai (WABI, 2006)

Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots. - Yinglei Song; Chunmei Liu; Russell L. Malmberg; Congzhou He; Liming Cai (Int. J. Bioinform. Res. Appl., 2006)

Efficient Parameterized Algorithms for Biopolymer Structure-Sequence Alignment. - Yinglei Song; Chunmei Liu; Xiuzhen Huang; Russell L. Malmberg; Ying Xu 001; Liming Cai (IEEE ACM Trans. Comput. Biol. Bioinform., 2006)

Effective models and efficient algorithms for structural bioinformatics. - Yinglei Song (2006)

Alignment of Multiple Proteins with an Ensemble of Hidden Markov Models. - Jia Song; Chunmei Liu; Yinglei Song; Junfeng Qu (ICMLA, 2007)

Time Series Similarity Matching with a New Distance Measure. - Junfeng Qu; Hamid R. Arabnia; Yinglei Song; Khaled Rasheed; Jack Houston (IKE, 2007)

RNA Folding Including Pseudoknots: A New Parameterized Algorithm and Improved Upper Bound. - Chunmei Liu; Yinglei Song; Louis W. Shapiro (WABI, 2007)

Clustering for DNA Microarray Data Analysis with a Graph Cut Based Algorithm. - Jia Song; Chunmei Liu; Yinglei Song; Junfeng Qu (ICMLA, 2008)

Knowledge Retrieval in Financial Domain. - Junfeng Qu; Yinglei Song; Hamid R. Arabnia; Byron Jeff (IKE, 2008)

Parameterized Complexity and Biopolymer Sequence Comparison. - Liming Cai; Xiuzhen Huang; Chunmei Liu; Frances A. Rosamond; Yinglei Song (Comput. J., 2008)

Parameterized lower bound and inapproximability of polylogarithmic string barcoding. - Chunmei Liu; Yinglei Song; Legand L. Burge III (J. Comb. Optim., 2008)

Haplotype inference using a genetic algorithm. - Dongsheng Che; Haibao Tang; Yinglei Song (CIBCB, 2009)

PaperGuard: A Support Vector Machine Approach for Screening Machine Generated Papers. - Junfeng Qu; Muhammad A. Rahman; Yinglei Song; Lei Zhu; Yong Wei; Weihu Hong; Hamid R. Arabnia (IKE, 2009)

Parameterized dominating set problem in chordal graphs: complexity and lower bound. - Chunmei Liu; Yinglei Song (J. Comb. Optim., 2009)

Alignment of multiple proteins with an ensemble of Hidden Markov Models. - Jia Song; Chunmei Liu; Yinglei Song; Junfeng Qu; Gurdeep S. Hura 001 (Int. J. Data Min. Bioinform., 2010)

Parameterized complexity and inapproximability of dominating set problem in chordal and near chordal graphs. - Chunmei Liu; Yinglei Song (J. Comb. Optim., 2011)

Applications of Machine Learning in Genomics and Systems Biology. - Chunmei Liu; Dongsheng Che; Xumin Liu; Yinglei Song (Comput. Math. Methods Medicine, 2013)

On the Independent Set and Common Subgraph Problems in Random Graphs. - Yinglei Song (CoRR, 2013)

A New Graph Theoretic Approach for Protein Threading. - Yinglei Song; Junfeng Qu (ICIC (3), 2014)

A Parameterized Algorithm for Predicting Transcription Factor Binding Sites. - Yinglei Song; Changbao Wang; Junfeng Qu (ICIC (3), 2014)

Design patterns applied for networked first person shooting game programming. - Junfeng Qu; Yong Wei; Yinglei Song (SNPD, 2014)

On the Induced Matching Problem in Hamiltonian Bipartite Graphs. - Yinglei Song (CoRR, 2014)

An improved parameterized algorithm for the independent feedback vertex set problem. - Yinglei Song (Theor. Comput. Sci., 2014)

A Graph Theoretic Approach for the Feature Extraction of Transcription Factor Binding Sites. - Yinglei Song; Albert Y. Chi; Junfeng Qu (ICIC (2), 2015)

Rapid Annotation of Non-coding RNA Structures with a Parameterized Filtering Approach. - Yinglei Song; Junfeng Qu; Chunmei Liu (ICIC (2), 2015)

A New Parameterized Algorithm for Predicting the Secondary Structure of RNA Sequences Including Pseudoknots. - Yinglei Song; Chunmei Liu; Yongzhong Li (Comput. J., 2015)

Time and Space Efficient Algorithms for RNA Folding with the Four-Russians Technique. - Yinglei Song (CoRR, 2015)

On the Dominating Set Problem in Random Graphs. - Yinglei Song (CoRR, 2015)

Lower Bounds for the Domination Numbers of Connected Graphs without Short Cycles. - Yinglei Song (CoRR, 2015)

On the independent set problem in random graphs. - Yinglei Song (Int. J. Comput. Math., 2015)

On finding the longest antisymmetric path in directed acyclic graphs. - Yinglei Song; Menghong Yu (Inf. Process. Lett., 2015)

Peptide sequencing via graph path decomposition. - Yinglei Song; Albert Y. Chi (Inf. Sci., 2015)

A New Approach for Parameter Estimation in the Sequence-structure Alignment of Non-coding RNAs. - Yinglei Song; Albert Y. Chi (J. Inf. Sci. Eng., 2015)

A Machine Learning Approach for Accurate Annotation of Noncoding RNAs. - Yinglei Song; Chunmei Liu; Zhi Wang (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Design patterns applied for game design patterns. - Junfeng Qu; Yinglei Song; Yong Wei (SNPD, 2016)

A New Graph Theoretic Approach for Protein Threading. - Yinglei Song; Junfeng Qu; Ying Xu 001; Liming Cai (Fundam. Informaticae, 2016)

A New Approach for Supervised Dimensionality Reduction. - Yinglei Song; Yongzhong Li; Junfeng Qu (Int. J. Data Warehous. Min., 2018)

Real-time image enhancement with efficient dynamic programming. - Guoliang Li; Mohammad N. A. Rana; Jinhong Sun; Yinglei Song; Junfeng Qu (Multim. Tools Appl., 2020)

Real-time classification of brain tumors in MRI images with a convolutional operator-based hidden Markov model. - Guoliang Li; Jinhong Sun; Yinglei Song; Junfeng Qu; Zhiyu Zhu; Mohammad Reza Khosravi (J. Real Time Image Process., 2021)

Real-time segmentation of remote sensing images with a combination of clustering and Bayesian approaches. - Yinglei Song; Junfeng Qu (J. Real Time Image Process., 2021)

Real-time registration of remote sensing images with a Markov chain model. - Yinglei Song; Junfeng Qu; Chunmei Liu (J. Real Time Image Process., 2021)

Optimal image based information hiding with one-dimensional chaotic systems and dynamic programming. - Yinglei Song; Jia Song; Junfeng Qu (Int. Arab J. Inf. Technol., 2022)

GarchingSim: An Autonomous Driving Simulator with Photorealistic Scenes and Minimalist Workflow. - Liguo Zhou; Yinglei Song; Yichao Gao; Zhou Yu; Michael Sodamin; Hongshen Liu; Liang Ma; Lian Liu; Hao Liu; Yang Liu; Haichuan Li; Guang Chen 001; et al. (ITSC, 2023)

Encryption of Color Images with an Evolutionary Framework Controlled by Chaotic Systems. - Xinpeng Man; Yinglei Song (Entropy, 2023)

Color Image Encryption Based on an Evolutionary Codebook and Chaotic Systems. - Yuan Cao; Yinglei Song (Entropy, 2024)

Accurate Brain Tumor Segmentation Based on an Improved U-Net with Feature Aggregation. - Yuan Cao; Yinglei Song (CACML, 2025)

Image based information hiding via minimization of entropy and randomization. - Xuemeng Zhao; Yinglei Song (Inf. Sci., 2025)

Automating Automotive Software Development: A Synergy of Generative AI and Formal Methods. - Fengjunjie Pan; Yinglei Song; Long Wen 003; Nenad Petrovic 001; Krzysztof Lebioda; Alois Knoll (CoRR, 2025)

Survey of GenAI for Automotive Software Development: From Requirements to Executable Code. - Nenad Petrovic 001; Vahid Zolfaghari; André Schamschurko; Sven Kirchner; Fengjunjie Pan; Chengdng Wu; Nils Purschke; Aleksei Velsh; Krzysztof Lebioda; Yinglei Song; Yi Zhang; Lukasz Mazur; et al. (CoRR, 2025)

A Unified Perception-Language-Action Framework for Adaptive Autonomous Driving. - Yi Zhang; Erik Leo Haß; Kuo-Yi Chao; Nenad Petrovic 001; Yinglei Song; Chengdong Wu 002; Alois Knoll (CoRR, 2025)