Relative quantification of proteins and post-translational modifications in proteomic experiments with shared peptides: a weight-based approach. - Mateusz Staniak; Ting Huang; Amanda M. Figueroa-Navedo; Devon Kohler; Meena Choi; Trent Hinkle; Tracy Kleinheinz; Robert Blake; Christopher M. Rose; Yingrong Xu; Pierre M. Jean Beltran; Liang Xue; et al. (Bioinform., 2025)

Protein cleaver: an interactive web interface for in silico prediction and systematic annotation of protein digestion-derived peptides. - Grigorios Koulouras; Yingrong Xu (Frontiers Bioinform., 2025)